G56795


Basic Information

Item Value
gene id G56795
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37201032 ~ 37267831 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU70983
CAGCATACATCCAGAGCGCACTACCAGGAATACCgcatcccatcatgcttcacgGTCGGCCGACGTTCCattcaatgtggaaaataaatggcGGACAAATCTACCGATGAGGGAAGCTCTCTGGAATTCAAATGAGGTTTCAGATCAAGGCTGGTGTATTTGTGAAGAGATCCGAATATGGACCCTTTGAGCGACATTTGTGTAGAAGGACGGTTGTGTCTTGCCTCAGTGACTGTTAGGAAGAAGGAGcaaagGCCCCCTCTGAGGAAGTCTGACGAGGCACAACCCTCCTCCGAGGCTCCCCACCACGGAGGgccaacggggcatccacacccaaggtctgacaaAGCATCATCACCCAAAGGCTGTGGATGgttcaacccccccccacccctgattGCCAGCGAGAGGACTCCTtgagagggaagaccacagccagcagcacggatcaagaactttctgatctccatGCTGcagtaataactatactgcctggagcagaggcaaccattaggcctaggccctaagccatagacccccagagatttattttccctacatgccatccataggagttttttgtttttctctcctccgtgcctaaatggtttatttatttaaatgttaatttactttattttagatcatgtaaactgtttaaaggtctgtttttgttttactttattgtattatttatgtattttattttgctgtatgtttgttgtatgtttaccagtctggaAAGCgttctgtggctaccctgcgaagggcgctatacaaataaaaattgat
>TU70984
ttaataacacaataaaaagttttaataattatgttaaaattATGTTACACTTAAAAAGCTATTACATCTAAACTTTTTAGACTTTTTCAGTGGTTGCAAATATGGGTAACACTGTTCCATATACTTTGGTTTATAGCAATCTATACtctattaatatattaataacaaccTATTAAAGCATTATTAATGTGATTATAAAACTTTGGAAATTACTCCTCCAGGAAACTGAAATGACAACTTGTTGTATTTAACCCATTACATGGACATCAGAGAACAAGGCTGAGATTTTTGATGTTCAATCACAGCTCCCTCAAAGCTTACACAGTATTTACAAATCACAACATTTCGTTACATGAACAGTCTTTTGTAACTAcattaagaatacattttataggtTGATATTCATCTATTAATGATAGATTGCTTATCAGTTGTGATGTAaccttattataaatatattatagtcTTATTTAAACAAGTGCAAACATTTGCTTAACCTTCTGCAGCagttattactatttatttgaaagtgtcaATGTTTAGAAACTACAATCTACTGTTTATCTTGCCCATTTGCATGGTGGGGTGGTCTGTCTGATGCTTACTGTCCAACATCGAAAACAGTTTTGTTGCTCAAATGTTCCTAATCTCAcctacaaatttagaattttgCAGATATGTGGTTCCTGGAAATTGTTTCAGCCTTATATATGTTGTAGATTTCTGTAATCACAGACCATCATGCTCTGAACACTTTGCAGCACTTATCACACCGGATGTCCTTGCTGCTAGTTTCCATAAACTAGGGACAgctgtttgaagaaaaaaacaacaacaaaagttgTTTTTCAAAGGTTAATCGTCTCTCAATGTTCTccagtgaatttaaaaaagatacaCTGAGCCGTAAACAAATCTCCAGACTTCACTGTACCTGTAGGCTTACtgctacatttgttttatggttAATGTAGAGCAGAGATCAAATTGAATTAGCCTACTTCTCAAGATGTTTTCTTAGTGAACCACTAATCATTTTTTGACCATTTAAGTTCCCTGTTAACTTACTCTTATTGCATCTCCCTTACACTTTCACATTTTTTGTGTACTTGGAATAAgttgattttcaaaaagctgcTGAAGCTATTGTTTTCATCTTTCCCCTCTTGGCTCAAACTAAACTGGCAGTGTAAACGGCAGAAATTGATTTTCTTCTTACTTCCACATCTTTCGTTGTAAAGCTTTTTAGCAGGGCTTCTCTGAACAGTCTGCACATGAGGAAATAAATGATGGGATCAAGACAGACATTAAGAGCCGACAGCAGCAGAGTACTTTCCTTCAAATGGAACAATGAAAACTTGCTCTGCACACTGTACGCACTACTAGTCTGACTTAAGGTGTAGGGGATCCTGCAGATATGGTAcggcacaaaacaaataaagaacacCAACAGGATGCTAAAAATGTTCCGGTTGGATGTCCTTTTGGTCTCTGTCGAGTCTCTCCTGAAATTCCTGTAGGAGTCATAGATCTTCTTGGCTATCGAGGCGTAGCAGAATGCCATCAGCAGGAAAATGCACCAGAAGACAACCACACAGCAGTAGTTTGAAAACTTGTGCCAGCGCACTCCCAGACTGGTTTTGAGGCCAATACAGCTCTTGGAAGTTTCTTTGGTCGCCTCCTTGCTGCTGAGAATTGAGTTTGGCAGCACAGAGAGCAAGAGCAGCAGCCATGTTAAAAAGGAAAGCCCTTTGGAGAGGCCAACACTCTGCATGACGGCAGCCCTGGATGTCTGGACAACTTTGAAGTACCGCTCCAAGCTTAGGAGCCCCAGGAAGACGATACCCACATACATGCTGGAGTAGAAAAGGACAGCGGTGTAGCGGCAGACCACCACCCTCATATACCAGCCTCCCCAGCCAAAGTCGTTGGCGATCTTGAAGGGGAATGTTAAGGTCATCAGCAGGTCGGCGACTACAATGTTCTTGAGGTAAACGACGAAGCTGCAGTTGTTTGGGATTTTGAAGAAGATGCAGGCAGCCAGGCTGTTGAGAACCAGCCCCCCAATGAAGACCACGCAGTATAAGATGGGCAGCACCTGCTTGGTGAAAACGCTGTTGAAATCCGTAGTGTTTCTGCTGATGTTTGCAGAGCTCTTTGGATCCATGCCTGCCTTCAACAAcaaagGCCCCCTCTGAGGAAGTCTGACGAGGCACAACCCTCCTCCGAGGCTCCCCACCACGGAGGgccaacggggcatccacacccaaggtctgacaaAGCATCATCACCCAAAGGCTGTGGATGgttcaacccccccccacccctgattGCCAGCGAGAGGACTCCTtgagagggaagaccacagccagcagcacggatcaagaactttctgatctccatGCTGcagtaataactatactgcctggagcagaggcaaccattaggcctaggccctaagccatagacccccagagatttattttccctacatgccatccataggagttttttgtttttctctcctccgtgcctaaatggtttatttatttaaatgttaatttactttattttagatcatgtaaactgtttaaaggtctgtttttgttttactttattgtattatttatgtattttattttgctgtatgtttgttgtatgtttaccagtctggaAAGCgttctgtggctaccctgcgaagggcgctatacaaataaaaattgat

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
TU70983 False 792 lncRNA 0.46 3 37201032 37267831
TU70984 True 2725 lncRNA 0.41 2 37201032 37226002

Neighbor

gene id symbol gene type direction distance location
AMCG00009394 NA coding downstream 103705 37088783 ~ 37097327 (-)
AMCG00009390 mbnl1 coding downstream 279893 36900293 ~ 36921139 (-)
AMCG00009391 p2ry1 coding downstream 326303 36873672 ~ 36874729 (-)
AMCG00009389 rap2b coding downstream 360695 36840116 ~ 36840337 (-)
AMCG00009388 NA coding downstream 433312 36733179 ~ 36767720 (-)
AMCG00009407 NA coding upstream 7631 37275462 ~ 37277549 (-)
AMCG00009411 NA coding upstream 11055 37278886 ~ 37279752 (-)
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding upstream 32697 37300528 ~ 37305420 (-)
AMCG00009412 LOC103360179 coding upstream 58924 37326755 ~ 37332027 (-)
AMCG00009416 rnf13,LOC106613488,LOC107551383 coding upstream 92254 37360085 ~ 37402881 (-)
G56742 NA non-coding downstream 32788 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 329209 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 807514 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 1095613 36080635 ~ 36105419 (-)
G56570 NA non-coding downstream 1311350 35889450 ~ 35889682 (-)
G56818 tsc22d2,LOC105899227 non-coding upstream 32713 37300544 ~ 37367669 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 150583 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 248138 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 368874 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 850597 38118428 ~ 38118843 (-)
G56568 NA other downstream 1328435 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1661222 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2838691 34334261 ~ 34362341 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other downstream 2885024 34239484 ~ 34316008 (-)
AMCG00009342 kcnab1 other downstream 2926948 34227274 ~ 34274084 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other upstream 12717 37280548 ~ 37285365 (-)
AMCG00009408 NA other upstream 17745 37285576 ~ 37394988 (-)
AMCG00009417 NA other upstream 199423 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 621671 37889502 ~ 37908968 (-)
G57155 dner other upstream 1312454 38580285 ~ 38582820 (-)

Expression


Co-expression Network