G56818 (tsc22d2,LOC105899227)


Basic Information

Item Value
gene id G56818
gene name tsc22d2,LOC105899227
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37300544 ~ 37367669 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71014
TGATCTGGTTGGAATAAATTTATTGATCTGTCTGTAAACAAGGTGGTTTATCAAtttatggcatttttttttttaatgcatattaaatCAGATGAGTTAGACTGTATCCCagatgcaagaaagaaaaaagtgcagGGAAAGAAATGAACATAAAAATCAGCAACAAGGTTTGTTTAATCTGTACAAATTCCACAAGGCCTGAACATTTTGAGTTTGCACTAAAATATCCCTAAGGAAGTGCCATTCAAATTACTCCTTTCTGGGCAGCCAACATCATCCATCTCACAATAGCAACAGATCATCTCTTACATTATGGCACAGGATACATAGATTTTGTATTAAGTTTTCCACAAGACAACCAAGTTTTCTTATTCCAACCAATACCATCtcccatttattttgtgtttacagaGTTACTTTTcagggtctttttttttttttttttttttttttttttttttttgggcggGGAAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAACCAAAGATGCAAAGCTGtgtaattcaattttattttgtaatgcacactctatatgtatttttagttttgttactttttccttcacaacaaaaaaaatcttttgtTGCTGTTTAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTAcctcatgtttttattcagcaCTCTTATTGTAACATAAAGTAGTCTGTGAACAATGtcaatgaaaaaagaaaagagaaaaacagaacgAAGAGCTGGCGTTGATGGAGAAAAACCTAGTGTTGTACACACTAGTTAGAGAAATGAAGTGAGCCatcttttgttcatttaaatggTGTTTTGAATTTCATATGCAGAAAAAAGTTTTGTTACATTGcaaattttaatgtatttaataaatgcaacattCAGATTCCAAGTGTAGTGTACACTGAGtatttaaatgagaaacattgtacatttcaaaaatacGAATGGAAACCAGT
>TU71015
TTTTGGGAGTGCTAAGGTCATTTGAATCTCTAAGGATAACACACCAGGGTCAAACACATCACGACCTGTATGCTACAGCCTACATTTCCAAAACCCTGCTTTTAGAGTTGCAGCTCGCACTTCTCCATTGAACTCTTATCTGGTGCGTAGCAtgggtttgttttagtttaaactGGTTTGGATGGAAACTTTCCACACTGGCTCTGTAAGGAGTATGCAAGCGAGCTTTGAGTGAACTTTGTCTTCCAGCAGAAGAGTGATTTtctaatgattttaaaattgttttgaaGGCTTAGAAACTGCAACTgagtttggaaatgttttcaaatcaaaacactaTGGTGGAAATTAGATTATAGCGATGACAGATGTAAAGTGACTCGCCTTCTTTTTTAGTttgacactgaaaataaaatcagataatGCCTGCTATGTTTTTGTGCAATATTTAATCCATCCAGTAAGATAATGGAGAGTAGACTCCGCCTAGTGTTTACTAGTACATGTGactacatttaaatgtgctCCTCAGGTTACATACACACTCAGACCCAGCCACTGAGTTACTAGCAGTGAGACCAGTAGCTTTCTTTGCACAGCCAGGCTTTTTCCTCCCTTTCTCCAAACCATTGGGAACTTTGTGGATCTGCACCATGCGCTCCAAGATGCCCTACCGCCTGCCCTGTTCGCCGGGCTCGTCCCCCCCGTACTCGCGGGGATTGATCGCCTATCGAGGGCGCTGCAGGTAACCCGATTGTGCATGGGCAGTTTCAAATAGAAAGGAATTACTTGTCTTGCATTAGTTCTGCGTGGAGCCACTCAATAAATGGACAAGTGTTTTGATTGAGTCCTGTATGTATGGCTTATGAATGTGTCTGAGTTGTAAGGTTTGTGCACGCGTGATTGTAACTTGCGAGTGCTCACTTGCACCAGACACGCACACTGGCTGGCTGTGGGTCTTCTCTGCATACGGGCTTTCGGAGTAGTTTGGTCATAACACAATAAGTTGCTTTAAGTTCAGGGCAAGTTTTCCCCGGGTGTCTGTAGCGCCATGAGCAGGAGCCGCCTGTCACGTATGTCAGGAGCGGGAGCAGCTGCGCCGCCCGGCCCGCAGAGCGCGTCTCTCTGGGGGACACGACGCTGCAAAATTAGCAATTTGAGTGCACGGGGTTTAAAGTTGCTCTCGTGTTACTGCATTAACCTTTTAATGGCGTTGTGATTTTAAGTCGGCGGACACCGCGCAAGTTAAACACGTATATTTCTTTTGAAAGTTTGCAAGGGATTCTGTGGTCTCGCTTGTTAACCTTGTCCAGTCCATTTACCGAAAACCACGGGCCTAAGGGGGTTTGCTGCATTACAAAGTGGGTGTTTGGCATTGGTAGTGGCACCAAATAAAGTAGTAGTAACTGTCTTACGTGCACCGCGGGAAGTGCTGCAACTATGTTGAAGGATACAATTTGAATACGGGCTAGAGAGCATGATCTGCACTCGGAAATAGATGCCAATAAACTACATCGGAAGGTGTATCTTAAATATACAGCGATTAAGATCAGATggcttttatttcagttgtatGCCAGTGGTTTGTCTGCGGAGCGTGGTGTCCGTCTCTGCGAGAAGCCTCCCCCACCCCTGAGCTCCGACTAGTGGTGTGCGGAGTAGCTGAGCCCTTTGTTCAGTCGCGGTTTGGCTGGGCGGTGTTGTAGTCGAGGAGGGGAAGGGAGAAAATACAGAGATCGGCCGTCGAAAGAGACGAGAAAAACGCTCAAATCATATAATCTGCAAACGCGCAGTCCGTTTCCAGGCGAGGCCGGGAAGCGAAGACACGATCGGTGGAAGGGAGCGGTGATGCGGTGAATttcatcTGGAGCAAGTGTTGTAGCCATCGATAACAAAATTGAGCAAGCAATGgATCTAGTGAAAAGCCATCTAATGTACGCAGTGAGGGAGGAAGTGGAGGTGCTGAAAGAACAGATTAAAGAGCTGTACGAGAGGAACTCTGTCCTGGAACGAGAGAACGCACTGTTAAAATCCCTGGCTAACAATGATCAGTTGTCCCAGCTTTCTGTCCAGCTCACCAATCCCAGCAGCACTTCTCCCCAGCAGCCAACGCTCAGTGCCGCCCCCAGCGAGGGCAGCCAGCCCCCGTCTCTCCAACAGCAGCCCAACGTCTCTTCTGCGTGAAGCATCTGGTCTTCGTAGagaaaaacgaaacaaaaaaaaattataaaagaattagaaaaatacatagtcTTTATCTTGTTTGCCACCGGTGTTTTTACCAGTCTTCAAGTGAAGAGCCATGCttcagtgtgtgctgtttttttttggccttCCCAGTATTAGACAATCATCCTGCAAGAGCTTTCTTTAACTTGACATCTCATGCTAATCCGGCGGTGTCCAGGCTGTTCCGGCAGTGCACAGGGAGAACACTTGTGGGTTTGTGGTGGGCGGAAAAGGCAGTATCTAAACAAGGCCGAGTTGGGGTACATCTCGCCTTTCTCAGGCTTGTTAGCAGGGGGCGTTTTTGTGAACATAAGGGGGTCGATCAAGCCTTGCTGTTTCATGTTGTAAGAAGTGCGAGTCTGTTTTAAGAGCCACCATACTTCAACATGAGtcaaatttacataatgaaTTCAGTTTTACTGTTTGCGTTTATTTATTACAGGGCTGctattttcataaatgtaaatgaacaatGTCACAGAatcagttggaaaaaaaaacgaaatctaaaaaatatgaacgtttgaaatgtaaaataattggtTAATGAAATGGATGGGTGGTGTTGCATAAAACTAGTTAAATATAGGCAATAATTAAGACATTCTGGCATAGTGCTAACACTAATGGCAATTTTACTTTGGGattgtttatttacaatagTTAAGACCCAGTTTGAATGTAAATTTTGTATAGAGTGTAAAGTTTAAAGAGCATAGCAAGTTTGTACAGGTAAACACCAGTTCTTGTGAttataaaatctgaaatttaATCTTTGGTGGACTATTTTGATGAAGAAAACTGTTCCATGTGTGTTGCTAGTTTCTTTATCAAAGAACGGAAAGGTAATTGCCAtaaatccctttttttttttttttttttttctctcctttttaattttgtcctgcatttttttttttttttttttttttgggcggGGAAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAACCAAAGATGCAAAGCTGtgtaattcaattttattttgtaatgcacactctatatgtatttttagttttgttactttttccttcacaacaaaaaaaatcttttgtTGCTGTTTAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTAcctcatgtttttattcagcaCTCTTATTGTAACATAAAGTAGTCTGTGAACAATGtcaatgaaaaaagaaaagagaaaaacagaacgAAGAGCTGGCGTTGATGGAGAAAAACCTAGTGTTGTACACACTAGTTAGAGAAATGAAGTGAGCCatcttttgttcatttaaatggTGTTTTGAATTTCATATGCAGAAAAAAGTTTTGTTACATTGcaaattttaatgtatttaataaatgcaacattCAGATTCCAAGTGTAGTGTACACTGAGtatttaaatgagaaacattgtacatttcaaaaatacGAATGGAAACCAGT
>TU71016
TGATCTGGTTGGAATAAATTTATTGATCTGTCTGTAAACAAGGTGGTTTATCAAtttatggcatttttttttttaatgcatattaaatCAGATGAGTTAGACTGTATCCCagatgcaagaaagaaaaaagtgcagGGAAAGAAATGAACATAAAAATCAGCAACAAGGTTTGTTTAATCTGTACAAATTCCACAAGGCCTGAACATTTTGAGTTTGCACTAAAATATCCCTAAGGAAGTGCCATTCAAATTACTCCTTTCTGGGCAGCCAACATCATCCATCTCACAATAGCAACAGATCATCTCTTACATTATGGCACAGGATACATAGATTTTGTATTAAGTTTTCCACAAGACAACCAAGTTTTCTTATTCCAACCAATACCATCtcccatttattttgtgtttacagaGTTACTTTTcagggtcttttttttttttgttgtttgtttt

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

NR:

description
PREDICTED: TSC22 domain family protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71014 False 983 lncRNA 0.31 2 37300544 37367669
TU71015 True 3681 lncRNA 0.42 3 37300544 37305990
TU71016 False 452 lncRNA 0.33 2 37315570 37367669

Neighbor

gene id symbol gene type direction distance location
AMCG00009411 NA coding downstream 20792 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 22995 37275462 ~ 37277549 (-)
AMCG00009394 NA coding downstream 203217 37088783 ~ 37097327 (-)
AMCG00009390 mbnl1 coding downstream 379405 36900293 ~ 36921139 (-)
AMCG00009391 p2ry1 coding downstream 425815 36873672 ~ 36874729 (-)
AMCG00009422 NA coding upstream 157862 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 163054 37530723 ~ 37535894 (-)
AMCG00009423 NA coding upstream 169852 37537521 ~ 37543355 (-)
AMCG00009425 NA coding upstream 176570 37544239 ~ 37550476 (-)
AMCG00009424 NA coding upstream 187144 37554813 ~ 37559533 (-)
G56795 NA non-coding downstream 32713 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 132300 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 428721 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 907026 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 1195125 36080635 ~ 36105419 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 50745 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 148300 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 269036 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 750759 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 757480 38125149 ~ 38125363 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 15179 37280548 ~ 37285365 (-)
G56800 NA other downstream 80468 37215960 ~ 37220076 (-)
G56568 NA other downstream 1427947 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1760734 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2938203 34334261 ~ 34362341 (-)
AMCG00009417 NA other upstream 99585 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 521833 37889502 ~ 37908968 (-)
G57155 dner other upstream 1212616 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1460296 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2753794 40121463 ~ 40157471 (-)

Expression


Co-expression Network