G56831 (LOC106583953,LOC106560594)


Basic Information

Item Value
gene id G56831
gene name LOC106583953,LOC106560594
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37418414 ~ 37422521 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71032
tttatagCCCATCTCAGGGAACTAGTTTCGTACGTCTATGGGTATttcaagtggaaaaaaaaaatacaaaaactttttaaaagtgtCAGCTCACTTACTTTAAGAAGTACCTCTGACCGGTGGAGGTGAAGGACATCTCCCACCCCGGCGGCAGGGGCAGCTCGTCGGCCACATCGAAGGACTGCTGCCGGAGGTGAGCGTGGTGCGCCGGGCTGGGGGTCGCGCCGGCCCCCGTCCCCAGCTGCAGCGAGGCCGGGGAGGAATGCGAGCGGACGTGCTGAACTGTCAGTCGGGGCGGGTGGCTCCCGGAGTCGGTGCTGGACTGCCGGGAGTGCGAGCCCGAGTCCGGCTCCTTGAAGAAAGACTCGGGAAGGAGCTTCTTCCTCCAGGAGCTGGGCTTGGGGTTCATCACCGAGTTGAACAGAGCCTCCAGGTCCGTGTCCAGGTCCTGGGCGACGTGGATCACCGGCTGCCTGGGTAAAGGCTGAAGCGGGTTGTTACTCATCTTCTCAGGAAAATTTACATCATTCTCCGTTAGATGACCATCCCTACAAAAATCACTACGATGGGCGTATTTGGCCGTCAGTCCTGCTGTCCAGAATCCAGTGAATTCCATTACTGTCGTGGAGTGGACACATCAAACACATCTAACGAACATGAGAACTGGAATCTCCCCCGGTCTGGAGTCTGGAGACTGACCCAGAGGACACAGCTATCCCAGCCTACCAGCCTCCCAGTAGCACACTCAGGAAATTCCCAGCACAGACCGGGTGGCTGGGAGAGCTGCTGAGGCAGGCAGGGAGTCCTACAAGGAGAGGCACGGTCAGCAGATTCTCCTGGTACTTCAGGAATCACCTACTGAATGTCCCACAGCAGCAGAGAACCAGAACGCACCACACTCAAGACTGCGATGGGCAATCAGGCATCTGTGGGAACCAGATCTAGATAGCTCTcttgctttccttttctttgttgCCTGTAGttgctttccatttatttattttaccggGAAGTTTACTTGTTTATAGGCAGGGGCAGGTTCTGGCTCAGCACACAAACAATGCAAAAGTACAGTCATCTCAATAGAGCGTGTGGGGTTCGTAGCTGCTGTATTCGGTGTCTCTGAATGGTGTAGTCACATCTCACAGCCATGTTGTGTGGCACCAATATCAGCACCAGCTCCACTGATGACACCTCCCACAAACTCTCCAGCCCAGACCGGCCCTTGGACCCAGCCCTTCtgctcctccctccctcccctgcccTGCAAATGCTGCCTACCCCCAGCATGGCAATGCTCCTGTGTGCGTTACACTCCAGTGGCTGCGTGTTCACCATCGCTTCCTGCATTATGTAACCCCCGGCACTGCACTCTTAAACTTTTGGACTTTGTTTTACACGCCAACTATccaagattgtttttttattgtatttgtaatgcatcttattgtaatataataaacTTTCCTGTAAATCAAGACttggttaagaaaaaaaaataattaaaatgaagatgtGCTAGGTCTCCACAAATGCTCATCAAATGTCCCCATGTTAACATCAATCCATTTGAAAAC

Function

NR:

description
PREDICTED: WW domain-containing transcription regulator protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71032 True 1577 lncRNA 0.52 3 37418414 37422521

Neighbor

gene id symbol gene type direction distance location
AMCG00009416 rnf13,LOC106613488,LOC107551383 coding downstream 15533 37360085 ~ 37402881 (-)
AMCG00009412 LOC103360179 coding downstream 86387 37326755 ~ 37332027 (-)
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding downstream 112994 37300528 ~ 37305420 (-)
AMCG00009411 NA coding downstream 138662 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 140865 37275462 ~ 37277549 (-)
AMCG00009422 NA coding upstream 103010 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 108202 37530723 ~ 37535894 (-)
AMCG00009423 NA coding upstream 115000 37537521 ~ 37543355 (-)
AMCG00009425 NA coding upstream 121718 37544239 ~ 37550476 (-)
AMCG00009424 NA coding upstream 132292 37554813 ~ 37559533 (-)
G56818 tsc22d2,LOC105899227 non-coding downstream 50745 37300544 ~ 37367669 (-)
G56795 NA non-coding downstream 150583 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 250170 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 546591 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 1024896 36096808 ~ 36393518 (-)
G56861 NA non-coding upstream 93448 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 214184 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 695907 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 702628 38125149 ~ 38125363 (-)
G57016 NA non-coding upstream 703460 38125981 ~ 38127340 (-)
AMCG00009408 NA other downstream 23426 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 133049 37280548 ~ 37285365 (-)
G56800 NA other downstream 198338 37215960 ~ 37220076 (-)
G56568 NA other downstream 1545817 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1878604 35538887 ~ 35539810 (-)
AMCG00009417 NA other upstream 44733 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 466981 37889502 ~ 37908968 (-)
G57155 dner other upstream 1157764 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1405444 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2698942 40121463 ~ 40157471 (-)

Expression


Co-expression Network