G57143 (LOC102787183,LOC106580884)


Basic Information

Item Value
gene id G57143
gene name LOC102787183,LOC106580884
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38501118 ~ 38503129 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71435
TCTTTTGAATGGAATCCATACACACCATATTGTATGGGTTTTTGTCCAAATCCCTGCCCTGCCCAAGGGGTTGCTCTCATCGTCCGTGGACTCGCGCTCCTCCTCAGCCTGTATACTGAACTGTCTGACAGCCTGGTACACCGTCATGTTGTAGGGCAGTAAGTGGTCTCCGATGTAGAACTGTAGTCTGTGCCTCACATTTCCAGAGTTCAAAAACTGTGCAGCCAGTGATTCATCGATTTCATCATCGGATCCATCATCATCACTGTCCTCATCTTCCTCTCTGATTCTTCCATAgcCTCTGACAACCAGGTATCTTTCAATAGCTTGTACCAAAGCCAAAGGATCGATCTTCACTGGACCCCCCTTCCATTGCTTCACGTTGGTGCAGTCTGGATGTCTTTGGAGCTGGCATTTTAACTGATGAGTGTTGAAGAATTTCAGGGCCTGAGAGCCTCTGTTaagaaaaaagcaacagaaaaaaacattatcctGAACTGAAAATGCTGCAACATACTACATGCAGTCGAATAAAGCTTGAGGGAAAACAATACTCCAATTCCAATTTGCATTACATTCAAAACATTCTTGTGTTATCAACTGCGAATGCCTACCTGCTGCCAGTTCCATTCCCACTAGGAAAGTCATGGACTTTCACTGGAAACTGTTCCATCTGGCTGAGACAATTGTTCATTTTGTGCACAAGAGCCATAAGGGGTCCATTCTCTAATGGATCAACTCTCCCAGGGGGCTCTGTTCCAGGAACCTGAAATCATTCAGTGAAATCCAAAGTGAAAACAATACTGCTTTGAATTATAATGCCTGTGTAACTGCAGTTATACTGTACaacacatatataacatatttaagacaactttttttttttgtgttacatTAACATTGTCTGGACTCGGCTGTTGTCGGAAGTAGCTTCGTCCTCAATGGGTTTCACTGATACTTTGATTTCCACTGATAAACCATAAGGTTGGCTTAGATCaaaaggagagaggaaaaagtaTGAGTGGAAAAAGatgtatacaattaatatagAGCTGCTCGCACAGTGTGCCTGTGTGTAAACATGCTCATACTAAACCAAACGATGGGGGTAGGCTGACCAATTGTACAAGCCCTCTTTACAGGGTAAGAGGAACTAAGAAAAATCCTGAAACCAAGAACACATAGCATGAATCAAATTATCCATTGTAGAATTAACAGAAATCCTCAGTATCTATACACACTCACAGTCTGCTCAAAACATGCACTGGCCACCTTGCACTGCAAAAGCCTAATGCTGAATGTAAGTTTGAAAACCTTGAagaaatgtgcatgtgtttacaTGTTTGGATATTAACCATCAATATCATATCATCAGAAATACTTTGCGCTAACTTACCGGACAtccaaaaaaaacatgcaggaaCCTCTTTAACCGAACATCCCGACTGACAGCATCCTTGTCACTGTTGGAGGTCAGGTACAGCAGCAACTGTTTCACAAACCCACTGTGCTGGATTTCAAAGGAGGACACGTCCGACTCTGAGACTATACTGCGGATTTCTACAAGGCACTCGATCCCGCCATCCACCTggatacacaacacacaagcgCTCGTTCAATTCACAGTTCACAAGTTCAGctcaacagaaaaacacagattgaAGGTGCATTCAGTTAGGTGGTAAAGGTACCTGTAGGTTGAGTTGTTCAGTAGCAGTGCAAAGTCTCTGTAGTACATTCAGTGCAGGGTTACTTGCATCCACATTCTCAGAGTTAAAATAGCGTTCCACAAACTTGCTGGCCTGTTCCTTTATCCAAATCTTGATCTTATCC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIP12-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71435 True 1833 lncRNA 0.42 3 38501118 38503129

Neighbor

gene id symbol gene type direction distance location
AMCG00009459 NA coding downstream 20083 38474184 ~ 38481035 (-)
AMCG00009461 NA coding downstream 64509 38432575 ~ 38436609 (-)
AMCG00009460 NA coding downstream 86797 38378812 ~ 38414321 (-)
AMCG00009458 NA coding downstream 133585 38357920 ~ 38367533 (-)
AMCG00009455 NA coding downstream 181685 38317970 ~ 38319433 (-)
AMCG00009467 daw1 coding upstream 251721 38754850 ~ 38762930 (-)
AMCG00009471 NA coding upstream 272429 38775558 ~ 38810559 (-)
AMCG00009470 NA coding upstream 314066 38817195 ~ 38820080 (-)
AMCG00009475 NA coding upstream 405893 38909022 ~ 38935195 (-)
AMCG00009476 NA coding upstream 509713 39012842 ~ 39013371 (-)
G57011 NA non-coding downstream 367152 38129295 ~ 38133966 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding downstream 371916 38128984 ~ 38129202 (-)
G57017 NA non-coding downstream 373440 38127468 ~ 38127678 (-)
G57016 NA non-coding downstream 373778 38125981 ~ 38127340 (-)
G57015 NA non-coding downstream 375755 38125149 ~ 38125363 (-)
G57165 NA non-coding upstream 129983 38633112 ~ 38633397 (-)
G57194 NA non-coding upstream 269297 38772426 ~ 38773951 (-)
G57244 NA non-coding upstream 578292 39081421 ~ 39083424 (-)
G57351 NA non-coding upstream 1077482 39580611 ~ 39588074 (-)
G57354 NA non-coding upstream 1085557 39588686 ~ 39588911 (-)
AMCG00009437 NA other downstream 592150 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 1025083 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 1106130 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 1215753 37280548 ~ 37285365 (-)
G56800 NA other downstream 1281042 37215960 ~ 37220076 (-)
G57155 dner other upstream 77156 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 324836 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 1618334 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3311430 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 3538070 42041199 ~ 42056128 (-)

Expression


Co-expression Network