G57244


Basic Information

Item Value
gene id G57244
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39081421 ~ 39083424 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71580
GTGAGCCGGGCCGGCGTGTTCGTGCTAACCCTAAATCCGTGGCTGCCGTCTCCGATAGTTCACTGTTTTTCTAGCTTTCAGTGGGCTTGGCGCAGCCCTGGTCGTGGGGGAGGTTGTAAAAAAGTCTAGGTGTCGCTGGCCCCTGGCTCATGCGGCGGGGGCGGGTCAGTGGCCGTGGTCAGCGCACGCGGCCTCGAAGAGTTCGTCTCTGCGCCCGACGCGACCCCCGCCGCCGACGCGCATGAGCAGAGCAACGTGAGCGCTGCGGCCGCTTGCTTTTCCTCCAGTCGTGGAATCTGCAAGCCTGCATCTGCTCGGACAAACGCGCTGCGGCTGCATGGCTGCCGTGTATCTGCGGGGTTTGTTAGTGCATGCTCCCCACGCCATTTCCATGGGAGGTGTTTTGGTGTAAAGCGGGTTTTACTTGTTTAATCTTGATGTTTGCATCGCTTACAGAAACATGGCTTTCTCGAGTACTTTTAATCCCAGTTTGACCTTGCATTACAAGGtGGTGCGTTAAGATAAATGCCCCCCCACGTCATGGTGAAATCCCAAGACGGCTGTAAAAGTGATGGGGAGTGGTCTGCAGAGCCCGGGGTCATCGCTAGATTGTTACTGGAATGCTAGACTGCACTGTTTGTGCTTTACTGATGGACCATTCAAATGGATGATACAATGTGGGAAAAGACAACCCCGGTTCTGGTTGCTCCCTAACGTCTAATAAAGTATGAGCGTCCGGTCTCTAACAAACCCCTGGTGTTCTCCCTGACCTGCCAGTCTTTCCCTCAGTCAAGTGAGAGAAGCCAAACCTCAATATCATGAGCTACTCAAACCAGTTCACAAGTGGGGTTGCACACTACTGACACGACCAGTTTTCTCATCTCATGGGTGTTAAGACTCTATGAGACAGAAAGGGACCTGAACATCTATTGAACTGTGTTTGCATCATTCCTGATATGGAGGTTTTGGTAGTTAAACTGTCATTTCATGAGACTAAggattttcttctgaaaaaagtattttgttttaatggtctTTTCATTATTAGAACTAGTGACCACGATCCTACAGTCATCAGACACTTTAAACCATGATGTATGTGTGCTGTATTACTATACACTGTGAGATAAGCAGCCCTTTATTGGCAATTGgccattcttttcttttttaacatcCGTGAGAACTAGTTTGTATTATGATGCGTAATAGTGTTCTATTGATGGAATCTTATGATGAGGTCTGACACGGCTGCCAGCATGACATCACAAAGCTTGGAGTGTAATAGAATTTCAATGAGAATAGTGCTGGAATGttactttcttttcattttatattgacCCCCACAGAACCCAGTTAAACTTTTGGTACTATTAAAGACTGTGCTGTGGGGGAGGGTCATGGGacataattacttaattgatgtCATTTTTAGTATAAGAAGTAAAACAACCTGTTTATTTCAGATCTCAATTAGTTGCTGATTGAAAGGTAACTAGAAAACGTACAGGAACCCAGTCTCAGAACTGGAATTGCCCAGCCCTGACCTCAGTCAATggtgaacagctgtcttttggCATTTTGCTGTTTGTACTGATCATTTTGATTATATtgcatataaatgtgtgtgtgtgcatgtatatatcaACTATACAGAGATCTGCAATATCAACATAACACCCCCAAAAGACTTCTTATGACCTATTGGGCCGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71580 True 1713 lncRNA 0.46 2 39081421 39083424

Neighbor

gene id symbol gene type direction distance location
AMCG00009476 NA coding downstream 68050 39012842 ~ 39013371 (-)
AMCG00009475 NA coding downstream 146226 38909022 ~ 38935195 (-)
AMCG00009470 NA coding downstream 261341 38817195 ~ 38820080 (-)
AMCG00009471 NA coding downstream 270862 38775558 ~ 38810559 (-)
AMCG00009467 daw1 coding downstream 318491 38754850 ~ 38762930 (-)
AMCG00009478 LOC107577679 coding upstream 182772 39266196 ~ 39271483 (-)
AMCG00009485 NA coding upstream 222549 39305973 ~ 39308183 (-)
AMCG00009487 NA coding upstream 229863 39313287 ~ 39398165 (-)
AMCG00009486 NA coding upstream 366293 39449717 ~ 39469293 (-)
AMCG00009491 NA coding upstream 433023 39516447 ~ 39520080 (-)
G57194 NA non-coding downstream 307470 38772426 ~ 38773951 (-)
G57165 NA non-coding downstream 448024 38633112 ~ 38633397 (-)
G57143 LOC102787183,LOC106580884 non-coding downstream 578292 38501118 ~ 38503129 (-)
G57011 NA non-coding downstream 947455 38129295 ~ 38133966 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding downstream 952219 38128984 ~ 38129202 (-)
G57351 NA non-coding upstream 497187 39580611 ~ 39588074 (-)
G57354 NA non-coding upstream 505262 39588686 ~ 39588911 (-)
G57379 NA non-coding upstream 723211 39806635 ~ 39806927 (-)
G57400 NA non-coding upstream 790547 39873971 ~ 39874229 (-)
G57524 NA non-coding upstream 1075973 40159397 ~ 40159608 (-)
AMCG00009472 NA other downstream 243827 38827965 ~ 38837594 (-)
G57155 dner other downstream 498601 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 1172453 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 1605386 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 1686433 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 1038039 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 2731135 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2957775 42041199 ~ 42056128 (-)
G58025 NA other upstream 3565426 42648850 ~ 42673707 (-)
G58333 NA other upstream 4398997 43482421 ~ 43945297 (-)

Expression


Co-expression Network