G57286


Basic Information

Item Value
gene id G57286
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39303337 ~ 39306230 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71626
TAAACAACTGGGCAGTCttttattaagaacataagaagaaagaacataaagtttacaaacgagaggaggtcattcgccccatcgtgctcgtttgatgtccattaataactaatgatccaaggatcctaccagtctgattttaaatgttcccattgTCTTTCATTTGTGTCTTGTATTTGAAGACCTACAGTTAAATGGGAATTTTggttaaaatgattatttagGAAAACATGTTATACGTATAAATGTACATTAGGTTCTGCCAATATCGCATTCAAACTCATGTTAACTCATGCAGCCTTGTTGACTGGTTCACAAATTGATTTAAACCAGTCTGTAGTATTTCAACTGGTATGAACTAACTGTAATGTGTCCATTTTATCCACATTAAATCTGCAGTGGCTCATTTAGGCcattacataataaaacaacagttaTGTCATGAATATATCTCAGGATCTTGATTTTACAAGCCATTATCTCTTGAACATGAGATATTGGAATGAATATCAAAATCATGATATAAGGAATCTGGTGATCAAGACCTAACGGTGGGTAATACTGAGATCAACTATCTTGTGAtcacaacaaaattaaaacccttttttgtgtgtattaagTCATGTCTTATGATCCACCATACACATTTGTTCACAATTTGTAAGCTGCAGTGTCCAGAGGGAAGTAGGCACAACACTAAATAGGCAGGATTGCAGAAAACCCAGTAATACTGCTGTATTTAGGGATTATTTTGTGCATGTTATTTTCTATTGAACTCATGGCTCATAGTCGGGCTAGAATGATAACCCAAATCTGGATAATAAGTTGGTGGGTACATTTGTATGCCTATGTGTGAGAgtacaaaatagaaaatcaaaagaaacataAAGGATTCATCCTGACAAGACTTgatattaattgattaataagtctaaaaaacattcaacagaacctcttcattaaaaataaaatgtgtaacaaaAGTGTGCCTTTCCAACATGCATattgaattgttatttttatgaatttaattgTTATTCATTGAGACAGTGCATTCTGATAATTAAATTACctttattcaataaatatataaagatttgaaattatttaattcatctAAAAATGTTTATAGTGAGAATTGTTTATTAATAGTTTATTCTATAAAGGGTGGTATTCAAGGAGTACATTTATGGAAGATTTCTGTCCGGTCCCGTTCTGACCGTTAAAATAAGTATACTATCAATAAAACTGatgtacatttccattatttcaCACTTGGTTTTGTATCTATCtctgtatctatatatagagatatatattaGGGATGGGTAGTATATCAGTTTTCCATGGTTTAGATACAGTACGGTATtggtaaaatatttatattatcctACATAGTGTAATACTAGCCGAGCAGTCTCCGTTATTTTAGAAGCTTACTGTTGACATTGAACACGCATGTGTAGAACTCGTCTCTCACTTCATGAACCAACTCCCTTCAGCGTAGCTTCCTGCTCATCACCATCACTGCAGTTCGGCATTAGCAATCTGCTTCCCAATGAAGCCGTGATGACTCGAGCCTTTGAAAACAGTGCAGTGTTTGAGGAGTGTTGCTGTGTAGACGCTGCAGAGTGCTGGTTTGCGCTCGTGGTGGAACAGATCCAACCTTTTTACAGGGACCATCACCCTGTAATTTATGCAGACATCTCAAAAGTAACTTATAGACAGTACAGGTATACGGCGGCCTGCTCAATCCGCTatgcacagatttgttttagcACAAGTTGattcaattaaatttaaaactaaaactgaaatatagtAGACCTATAGAGAATGAAGTTGCATGACCTTAAGGTAACCGCGGTAGTTTTGCTTTTGGTTATCGTTTCATGGAACTTGTtatcttcataaaaaaaaaaatgtatgtgcaatCACCATTTCAAAGAACCCCAGAACAAGCACCTAATGTATAATTTGACATTTACAATTATGTAGTGTGATTTTAGACAGTGCAATCATATGTACATATAATAGAACAGAATatcaagtacaaaaatacatggattaaaataatacaagtgtTGTCATATTCCTAGGCAGAAGCCCTTTGAAAGCCAAGTGTGGGGGAAATATAAAGCAGATGGAAGGATaatttttccatttgctttatACTGTATCGATTATCTCTAAAGAACAGGATTTGCAGACACTAATATCTTCTGTGCATAATAATGTGCATTAATCGAGGTTTGGAAGACCATCGCCACACACTACTCCATGTAATAAAACACCCGCTCAGTTTCACAGTAAAGACTTTGTTCAGGCGCTCTGGACTCTTTTTCGAATAAAGGGTACCTGCAGTACTTTTTCCTGCCAGTCAACCATTAACTATTGTTACTGGAAACACAATCTTCAGGAAAAATCACTAGTATCAAATCTTTGTCAAGTAAGTTAATCTTCTGaacctgtaataaaataaatccacattgCCTTTTATGAGCGTTAATCGGTGAAACTAAACTGGAGTTGGTGTTAATGTTTTGGGTTTTGCTCAGTGCTCGGTGACCCTTCATGTAAAGACACTTCCCTGCTTCCTGAGAGTGTCCGCTGGTGGTCAAAGGGGTTGTTGGCTGTCACTCCTTCATACACACATGGCATCTGCTGACCCTCTGCCTCTTCTGATGCTCCTCTTTGAGCGTCTCTGCTGGAGTGTCTCTGAACTGCTCGTGTGTCTTCATCCCGGTGAGCCAGAAGCTGTACTTGTTATTAAAGTAGTGGCAGGTTCCCTGGGCGCCTTGGCATTCGATGAACGGTGTGGTCCGGAAGTCCTGCAGGCAGCTCCCCGGCGACGTCAGGGACTGCCCCCCTCCCTCGTCCCCTGCGGCGGTGTG

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71626 True 2894 lncRNA 0.37 1 39303337 39306230

Neighbor

gene id symbol gene type direction distance location
AMCG00009479 NA coding upstream 552 39277091 ~ 39302785 (+)
AMCG00009477 NA coding upstream 148243 39133854 ~ 39155094 (+)
AMCG00009474 NA coding upstream 402800 38869487 ~ 38900537 (+)
AMCG00009473 NA coding upstream 460026 38841956 ~ 38843311 (+)
AMCG00009469 NA coding upstream 485671 38814035 ~ 38817666 (+)
AMCG00009484 NA coding downstream 72019 39378249 ~ 39393565 (+)
AMCG00009483 NA coding downstream 87339 39393569 ~ 39401188 (+)
AMCG00009482 NA coding downstream 98099 39404329 ~ 39405173 (+)
AMCG00009481 NA coding downstream 103262 39409492 ~ 39415596 (+)
AMCG00009489 NA coding downstream 176931 39483161 ~ 39503369 (+)
G57175 NA non-coding upstream 468392 38757380 ~ 38834945 (+)
G57164 NA non-coding upstream 669986 38633097 ~ 38633351 (+)
G57161 NA non-coding upstream 675202 38627919 ~ 38628135 (+)
G57036 NA non-coding upstream 1022858 38202794 ~ 38280479 (+)
G56995 NA non-coding upstream 1169371 38130082 ~ 38133966 (+)
G57287 NA non-coding downstream 258 39306488 ~ 39306774 (+)
G57329 NA non-coding downstream 153168 39459398 ~ 39459676 (+)
G57378 NA non-coding downstream 500353 39806583 ~ 39806928 (+)
G57401 NA non-coding downstream 568651 39874881 ~ 39875170 (+)
G57428 NA non-coding downstream 634992 39941222 ~ 39943036 (+)
G57105 NA other upstream 845745 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 1686641 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 1698213 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 1839832 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 1935666 37348108 ~ 37367671 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 128670 39434900 ~ 39437017 (+)
G57430 NA other downstream 641776 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 780244 40086474 ~ 40105052 (+)
G57604 NA other downstream 1684572 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 2289999 41596229 ~ 41599124 (+)

Expression


Co-expression Network