G57351


Basic Information

Item Value
gene id G57351
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39580611 ~ 39588074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71700
CTCGGAAAGGGTTTCATGGCTCTTACGGGCACAGACGTTGAATAACTCGAAAACCCTGAAAGTCTGCCTTGTCCCTGAGGCTATCGGAAGGGTAGtttccaaccctggtcctggagggtgCCAAAGCCTTTAGGTTTTTATATCCACTGTACAAATCCCATGAATCATGAATGAACAGTCCCACAATTGATGGAAAACTGTCAGCACGTTTGAAAGCAAAAGGTGTTAGTGATCAGATCTTCCAAAGATGTGCCATGTTGGTGAGAGTGGAATAACTGGGGCAAATGGGCAAGAGAGATGAATACAGGGTAgtcacattaaaaatgaaatatcaacCTTTGTACACTATTTCCACATGCTCTTATTTCTCAGGTGTTGCACCATGCTGTggtatttttgtctttgtaaaAGACGCTTAAATGCTTCTTGCATTCAACGCATTGTGTTCAGTTAATTATACGATACAAATGAAAGCCATTAATGTGTTGCTTTTCATTGCTGTCAGCGCTTTACAGGGGGTCACCAGGACATGTTCAGTTCCTTTTGGAATGCAATACAAAGCCATAGGCAAAGTTATCACAtagtttgcttgtttgctgtTAATAATGCATCATTCCAAGCTACCGTTGACCTCTTCCTCTAGTGTTTACATAAAACAGGGTTTATAAATGGCATACCAAACCTCAAAATAGCCAGCATTGAAAAGGGACCTTTTGAACTGTCGTGGAATGTGAAACGGGCAGAGGCTGTTGTTTGCTTGGACAGGAGGCCTGGTTAGTGtcagagagaaggaaagacaCTGGTGCTGTTAAGAGACCTAAAGACATTCAAAAGCAGAAgGCTTCCCAtttcaaaaaggaaattatCTGCTTAACATGCTTCTGGATCAggataatgataatacaaagGTACAAAGGCACGTCAAAATGCTCAAGGGAGTGAAAATAGCTGTTAAGCCTCAAGAATCCTTCTGATAGATGTGTGGGACTCCACAGACAGTTGCATGATGGCTACATCAGTGGAGCGGTGTTGCATCTTGATCAAGAAAGTGCATTGTGCTGGCTGTGTTCCAGTTCTGATGAGCACCGAAGTGGCACCAAGATTCTCCTGCCAGATTCCCCTTTGACAGAGCGTCCTCGGTGGGAGACCAAGCACACCATCCCCGAATGAATGGAAAGAAATGTTGAAGAACTGCCCCTTTAACTTTTCCTCTTTCCTGCTCAGCAGACACAAGAAACCCAACACTTCAACCAAATAAAGGAGGGCGCAATTGACAAGGGACCAAATATCCTCTTGCatagtcattttttaaaaggatttaatATCCTTTTACATGCTCTTCATAACATTTTGACAGTTATTgagctgcagttttttttttaatatgtatgtgtgtatgtattgctTGAAACTGAAAAGGCTAGTCAGGTAATCTTGttgtttgttgtcattgtgGAATGGTGTTTTCCTAAGAAGCCAGGGCGAAATGGTAGTTACAGGTAACTTTTCATCGCAGTATGAActttggtcctcagtttgctccattttttattaattgcacCATCTGATTAAGGTATGAAACgaattgtgcttttatttcgTGGGAAGAGGTGTGCATATAGACAGGTTCAATTGACCAATTCAAGCTTTTATTGCTGCGCAATATGCTACACTTACAGTAcatgttgtatatatattgtgaaagttattttcaaaaaggtcaatgtcctggactggcccagtcaaagcccagacctcaatccaattgagaatgtgtggaaaattctcaaagaaaaaaatgctgtgtccagatgtgcacagctggtagagactgatccacatagactcatggctgtaattgctgccaaaggtgccaaatattgactgaaggggtgattacttatgcattcaattattttctgttgtgtatttgtaattatattatagttttcactttgacattatggacattttctgtgttgatcagtgtcAAAAACTCCTGATGAAATCCATTCTGAgttcatattgtaacacaatgaaatgtggaaaagtccaagggggtgaatacttttgagagccactgtacataGCCTCCAGTTCTGTCCACcttttcctgcattttaaatattattgtgtAACTGTAGCCTATACTGAGGGCTTCCTATTTGCAAATGAAATATAGAggtgtttatataaaaatatccatatacattatatatatttaaatatatatccatcATACATTCcatatacatgtaaatgtatgtagttTAGTTCATAGttctctgtttcttttctgtaaGGGAATCTCAGACATTTGCAAAGCATGCATTCCCCTCCCAACACCAAACCTACATTAAAAACCCTTTTGATTTCCCAGGAACCCTCACAGGTCCCCCCCACAGTACTTATTGTTGTTTCTCATGCATTTGATCACTGACCTGCACTGATTGTACAGTTTATAAACTCTTTGCGTTCCAGCAGTGGAAAATTACTGCAGTGAATGAAAGGAATCTGCCTCTTTGTGGGAAGGGTATTGTGCTGCAGCACTAGGGTGCCAATGTCCCTTTTTTGTGAGCAATTTGTGCTGAAGGTAATAATTTTCTCAAAACAGAGGAAGGTCTTCGTTTCGATTAGCGAAACAATGGGAGTAATTGTTCGACCAAATACCTGAAAACAGTGGAGTAACACGCGCCCAGCGCCTTCCTTCGAGAAAGACGGCTTTTCCTATTGTCACTCCTGCGTCTCAGGTGGTGAGATATGATCTTTACAAATGGCAGGCTGCATAGCTGACGAAGGGGCAGATTTCAAACAGAGCAATTTTACAGGACAGGAAATAAACCAGGGATTATAAAGGTGGTTAGTAAACCTCTGTGTATCACCTGCACCTTACAGATTACTTGACCAGCTTTCCAGAAACCCAGGAGCATTTACAGTAACTGTAGGTAGTTGTacttgaaagtattcacacccttaatTTTGAAACAATATGACTCAGtgctttgtatgttttatattatacagtTTACTGAATAAGTATATATGCTTCTAAAGTTTGCCTGAGTGGCTTCTTCTTAAATGTATACTAACAGCTGATTGGGATTGTGCAAGTGTGGTTTGAGCATCAATCACGTTAGTACAGCTTCACTCTTTGCATGAATCAGATGTGAAATGTGTACCTTTCTTAGAGATTGATGAGTTAATGCAGGAGACCTCTATTCCGCAGGGGCCACAGAGTTCACAATGATCTAAATCAACTATCCTTTTGCTAGATTACACTAGCGCAACACATTTGCCTGCTGTTGATTTAAAGAGATACTATAAAACCTGCGCACTGCATCCCTGAAGCTCTGGAGCCGTGTACCACTGACTGGAGTTATTAATCAACGTTGCCGTTTACTTTAATCAACCACAAGAGGGAGTGTATTACACATTTGACAACAGCAAAATAGAAGAAGAAAGACACCCTCTGTTCATCTCAACATTAAAAACGTTTACTGAGAGCATGCatcatttcttttaaatgtatttt

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU71700 True 3532 lncRNA 0.40 2 39580611 39588074

Neighbor

gene id symbol gene type direction distance location
AMCG00009491 NA coding downstream 60531 39516447 ~ 39520080 (-)
AMCG00009486 NA coding downstream 111318 39449717 ~ 39469293 (-)
AMCG00009487 NA coding downstream 182446 39313287 ~ 39398165 (-)
AMCG00009485 NA coding downstream 272428 39305973 ~ 39308183 (-)
AMCG00009478 LOC107577679 coding downstream 309128 39266196 ~ 39271483 (-)
AMCG00009494 NA coding upstream 1794 39589868 ~ 39614413 (-)
AMCG00009492 fgf12a,fgf12,LOC107572463,LOC107704679 coding upstream 58752 39646826 ~ 39654320 (-)
AMCG00009493 fgf12,fgf12a,LOC104939444,LOC102791340,LOC107384013,LOC100711708 coding upstream 91844 39679918 ~ 39692549 (-)
AMCG00009502 mb21d2,LOC106612350 coding upstream 179586 39767660 ~ 39768919 (-)
AMCG00009501 NA coding upstream 231659 39819733 ~ 39827370 (-)
G57244 NA non-coding downstream 497187 39081421 ~ 39083424 (-)
G57194 NA non-coding downstream 806660 38772426 ~ 38773951 (-)
G57165 NA non-coding downstream 947214 38633112 ~ 38633397 (-)
G57143 LOC102787183,LOC106580884 non-coding downstream 1077482 38501118 ~ 38503129 (-)
G57011 NA non-coding downstream 1446645 38129295 ~ 38133966 (-)
G57354 NA non-coding upstream 612 39588686 ~ 39588911 (-)
G57379 NA non-coding upstream 218561 39806635 ~ 39806927 (-)
G57400 NA non-coding upstream 285897 39873971 ~ 39874229 (-)
G57524 NA non-coding upstream 571323 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 751273 40339347 ~ 40343479 (-)
AMCG00009472 NA other downstream 743017 38827965 ~ 38837594 (-)
G57155 dner other downstream 997791 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 1671643 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2104576 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2185623 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 533389 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 2226485 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2453125 42041199 ~ 42056128 (-)
G58025 NA other upstream 3060776 42648850 ~ 42673707 (-)
G58333 NA other upstream 3894347 43482421 ~ 43945297 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G124203 NA non-coding NC_047601.1 CM018547.1 30087728 ~ 30089080 (-)