G57545


Basic Information

Item Value
gene id G57545
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40339347 ~ 40343479 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71955
atccaacacacacacacacacacacacacacacacacacacacacagcgccaGACTCACGCTGGCTAATTGGAGGCTAGAAGTCCTTATTTcacctgattttattttagaaacccGGAGATGAGCACATGGAGACCTGTGTGTTTAGAAAGACATAAGAAGGCAGGGGAGGGCAACACACATCTGCCCATACAGGAGATATCTCTAACAAGAGGTTTTCTTATTATGACAGAGGCagggaggaagaaaaagaaacccaagTCTGACAACCCAGGGAAGGAGTTCAGAAAAGCCAACTGACACTTGTAATGAAGTCTTCCCGGGACACATATTCTcatgttgtgtttgttcttctCTTAAAAAATGGTGAGtgacttaaaatatatacatttgtacacATGCTATGTAAGTGGTCTTTGCACATGTGATGCGGGTGAAGGATGTTCATGGAAAGAAACGGGTGAAAACGtaagcagattttgtttttgtcagggTTTAGTCGATTTCTGCCAAGCGAGCTGCCTGGGGGAAATCGGTTTCGTACAGTTCGGCCGGTTCACATCCTCGTCGCATGTTACAGCCCAACAACATCATGAGATCAACATTTTATACACTACCCACAGGTCAAACCCTTGTCAtcctatactgtatatataaatatatgtatttacatacatCTTCTATATATAAATCTCCAGTACTGTACAAGCTACTTATATGGAACACAATACATGGTGAAGTACAGAACTGACAAACATCAcatgacagaaaaaataaactaaaaagaaatTATGTTATACAAGATATTATCCACATATGTAAGTCTGAAGTCATTTGAAGTGTCGTTTTTAGAAGAATAACCTTGTTTGTGCGTGCATTTCAAATGGGTCGGGGTGTAAACCCCACAAAGCTCGCCGCAAAGCCTGGCAGCATTACATggcacagtttaaaaaaaaagcaggagGCATGTTACACGCATGAACATAGGATtacaaactccaaactgtttACACAGATTAAGAGAACAAGTTaggaaatataatgaaatactgtaaaacacaaacaaacaaaaaaaacatggaaaacaccagttcatataaaatacatataatctgAAAGGCTATAGTGATAAAAAAACAACGTTTAAGGATACGTGAtgctttgatttttaaatattgttgtttgtgtggagaaaaaagcaaaaatacgTGCTTATTGTGTTTCGAAGGGCGTAGAATTCTGCTGCAAGTGTTTATGACTGTAGATTCAGGCCACCGTTCAGACTTGCATTCTTTCAATATATTGCTCttggaaaacaggagaaagcACTGGAGAGAGTTTGCATTGTGACTCCTGCGTGATCATAGTTTATTTCTGTAGAGAAGGCATGAGACTGGTCTGATATTGATCTTGGGTTTCATGCCTGTTAATGTGTGGTTTGATCTGCAGGGGAGGTGCGGACGCTGCCACGTGTGGCTCAGAGAAAAACACCCACTGAGTccttatgtatttgtgttgcacTTCACTTCTGTCCTACACTGGCCAGCGCCATGCCCAATGCACTGCCTCAAAACCAGTCACTGGCAAGCAAGACATGGTCATTGCAGAATACTCTGGAAGTCCCTGATGTGCTCCTGAAATACGTCCCCGACATATTATTCCCCCACAGCTATCAGGATGATGAAATTTAATGAAAAGACTTTACACTTTTCATTTGTGGGGAAAAACAACCGAATTTCTATACTGCGAGATGCTGACTCAGATTACAGAAAGAAGAAAGTAACTAGACTGAATTAAGTatgaaaaattaagaaatgggaaaaaaagggaaacataaACCAGCCCCGTACAACCAAGTGAGTAATTAATCATAGCAGCAGTAAAGTGAAGACCGTGTGAGTATAGCAAAGGCAAAATGtgtaaagaaatagaaaaagcacagcaaaatATAGGGAAAACTAGGGGAATTCAAAACGACgggaaagacacacacacggaTTTCAAGCAATGGGCATTTCAAGAAAAACGCTGGCATAAACATCGGCCAGCCACCCCAGTGCCAAGCTACACACTCTATTATTTGTATATCTGGTATATAGGGATGTACCGGAGCTCCAGCCTATTTAAACTACTTTTTTTGCCAAGCAAAGTGGGAATCTTACAGTGACCGTTCCGCAGATCGCGGTTTGGGAAAGGTGCATTTCTGTCGCCTTTGTGCCCTGCGAGCTGTCAGTCACGGCTTCCTGTTTGTTCTGAGCCTGGTGACTTGCTTGGCATTTTGGCGTATCTGCACCTGACTGTTCACTCCCCGTAGGCTCTCTCTACCCACAAAGTGCCATTGTGCCGATGCGTCAGTGTGCATTCAGCGACGATAACAAGAAAGAAAGTCAGACCACAAAGAAGACACATTTGCATGATAAAAAGACATCAAGTGTATAGAAAGGGTTTGACCTTAGGTGGAAAATGTCTCTCAAAAGCTGTTTAGGAGAGATTGTACCAGAGCCCAGTGTCCTTATAATCACAGTACACTTGGCACTGATTAAGCAATAGTTTGAATAAATTCTGATGCTTAGTTGAAGTGAAATGGTGTTTGTGGGTTTTGTCAGCAGGACAATCATtcccatttcatttattttacctaAGTTTATTAGGTAGTTGGAAACAGTGACACTACTTCTGAATTGTGAATATACTACGATATAAGATGGTTGCCATTAGTTTCATAGCGATCTATGGAACCCGACTAAGAAAAGCATTTCCAGCCACGTTCACTGATTTTGCCACAGATCTCTGTGCTTTGATAGGCCACCCTGTGCCACCACATTGTAAGTTAAAGGGGGCCTAGGAGCACCACAAGTAATACTGTTGTGTAATCCTGTTCACGTTTTGTTAATATGTTGTACAGACGAAAAGGCAAAGCATTAACACAACTGCAACTCTATCTCTAAATGGAGATCGTTTGTGAGATTGTTGGAGGAGATTTGAGAGCAGATTCCTAAGCTGTAGGCTCTCAAAGTATACAAATGATGATGCATCTATTTTTCTATCGGTGCGCTAGTGACACACCCCTCGATGGATGCTGAGAGATTACAACAAGAGGGGTGTTTGGTATAGGGCAACAGCTTTGCCGTGGCATTGCCCGGTGAAGCAAAACAGTGCCATGCTGTGACTGGATGCAAACTAGAAAAAATCAGATGGAAAATGGGGCAGCACCGGAGAGGGACACTGTCTTTGTGGGTTAATCCTCCACTGTTAAAAAAGGGGGTTGACAGTAAAGCAAGGGAGATACCATTACGACAGGAGAGTTACTCTGCCTGGTCATATTGAAGTGCGCGCTGAAGGGGATAGAGAGGGGTGTAGATGTGCACGGGGGTGATTTGGCTGCCACCTGGTTGCCCTTAATCTTAAATGTATGCAAGTCATCACTTAAAGGGGAATctaaagtgcaaaaatgcattcaaaccCTAGAAGTAAAAgagcatatttaaaaagaaactcaaACTGGAGGCCTCTATCAACAGATTTCTGTTCACCCTCCTGTCAGTGGTCTCTGTATCTCACCATCTCGGAAACAGctcaaaactaaaattaaaatgctgtacCAAGCCTTGCTGAAGTGGAAAACTGTTTCCATCTAGTAGCAGCAGTGAAGGAGACTTTAAGGTTTAAGCATATGGCGGGAGTATCCAAAGCTTGTATTGTGGAAGGCTTATCTTTTATAGATATATGAGGGATCTCATTAGCCTGaaacagaacaatacaaaatacagaacaacCTATAATCGAATCAACCAGTTCTCTTCCCATACAAGCAGCCAGTGCCAAGGGCCGGGCCTCGGGTGTTGTTGAGAGGCTGTGGTGACGGAGCGACGGAGCAACAGGGCGGTCCGACCAGGAAGCACTTTGGATTTGGAATAAGGGATTACAGCAGCTCGAGCGTACATGAAGAGAAGATGCCTTTctctgtggtttttattttttctcctagAAGGCCCCTGTTTCCAAGCGAATGCAGAGCAGCCTGAGAAGCAGCAggttaaatgaaagaaaaaaagacagccTTGTTGAGCTGGCACACCTCCATATGATCAGAGTCCAAAGgccacccacacccacacccccacccccacccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71955 True 4133 lncRNA 0.42 1 40339347 40343479

Neighbor

gene id symbol gene type direction distance location
AMCG00009520 NA coding downstream 159112 40178486 ~ 40180235 (-)
AMCG00009518 LOC103034503,LOC107683000 coding downstream 171846 40160222 ~ 40167501 (-)
AMCG00009517 NA coding downstream 220619 40106123 ~ 40118728 (-)
AMCG00009522 wdr33,LOC107705313,LOC107653512 coding downstream 271098 40052151 ~ 40068249 (-)
AMCG00009519 wdr33,LOC107695163,LOC107737411 coding downstream 297131 40030523 ~ 40042216 (-)
AMCG00009528 NA coding upstream 114328 40457807 ~ 40472602 (-)
AMCG00009527 NA coding upstream 129157 40472636 ~ 40480067 (-)
AMCG00009531 NA coding upstream 138197 40481676 ~ 40493252 (-)
AMCG00009532 NA coding upstream 151720 40495199 ~ 40495887 (-)
AMCG00009537 NA coding upstream 416416 40759895 ~ 40833267 (-)
G57524 NA non-coding downstream 179739 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 465118 39873971 ~ 39874229 (-)
G57379 NA non-coding downstream 532420 39806635 ~ 39806927 (-)
G57354 NA non-coding downstream 750436 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 751273 39580611 ~ 39588074 (-)
G57596 NA non-coding upstream 377952 40721431 ~ 40777084 (-)
G57600 NA non-coding upstream 589486 40932965 ~ 40933210 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 1829779 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 1861791 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 2124706 42468185 ~ 42468759 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 181876 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 1501753 38827965 ~ 38837594 (-)
G57155 dner other downstream 1756527 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 2430379 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2863312 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 1471080 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 1697720 42041199 ~ 42056128 (-)
G58025 NA other upstream 2305371 42648850 ~ 42673707 (-)
G58333 NA other upstream 3138942 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 3646032 43989511 ~ 43995654 (-)

Expression


Co-expression Network