G57858 (LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453)


Basic Information

Item Value
gene id G57858
gene name LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42173258 ~ 42175707 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72332
TGTGGCAcaggattacatttttatttaaaatatacagtggtAGGATATCTCACATATATGTTACAATTGTATAGTTTACAGATATTCAAAGGTTGTTCATTCTGCAATAACAGATAATGTAGATCAGTATGTGATGCATATAGAACTGTGCAGATACCAGAGTTTTGAAGGAGATCAATATGAAAGTTACATTAGAGTAACAACAAGTGTTTTGGGATTAAATTTACACAATGTTGTAAACTCTTCAAATGGTGGATTATTAGTCAGTTCTGAATGTGAACATGAGCCGATTCATTTTGATCAGAATGGTCAGATCAGGTCCAGTGTAATGTTCATATTTACCAGACAATCTGACCATCAGTCTAGAGCTTCAATGTGCAAACTGTCGTTGAGCAGTGCTGTGTGAATACATTGAACAGTGTCAGACAGCTCTGCTCAGTGAATGATGTCAGCAGGTCCGTTCAGTACCAGGAAGgggtttgttcttgtttgttcgGGATTTATTCCACTCCCTTCATAAACTCCAGGAATTCGTCATAGTCGATCTTGCCGTCGTTGTTCTTGTCCCCGTCCCTCATCAGCTCCTCGATGTCATCCTCTGTGATGGCCTCCCCAGTGGACTCCAGCATCAGCTTCAGCTCATCTAGGTCAATGTAGCCGTCTCCATTCTTGTCAAACATCCTGAAGAGCTCTGCCAGTTCCTCCTCTGACTTTCCTTTGTTCTCCTCTTTCATGCACCGCACCATCATGACCAGGAACTCATCGAAGTCCACTGTCCCGCTACCGTCCTCATCTACCTCGTCAATCATCTCCTGCAGCTCCTCAGGGGTGGGGTTCTGGCCTAGCATTCGCATGACCTTGCCCAGCTCCTTGGTGCTGATACAGCCATCCTCCGCGTCCTGAATGAAGATGTCGAAGGCAGCCCTGAACTCTACAGTGAGAGGGAACTGAGACACTTGAAGGGCCCGGACAGAAGAGAGAAGCCCTTTGAACCAATCTTAGTGCAAAGTGGAATGAGGATCTTGTCATAAGTTGACTATAAAGGCACAAAGGTGGGTCAATATTGTGCAAAGCAAATAGTTGTGGTAGTTTTGAGCATAGGCAACTAATAAGtctaaac

Function

NR:

description
PREDICTED: troponin C, slow skeletal and cardiac muscles-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72332 True 1120 lncRNA 0.44 4 42173258 42175707

Neighbor

gene id symbol gene type direction distance location
AMCG00009584 NA coding downstream 10655 42143592 ~ 42162603 (-)
AMCG00009585 NA coding downstream 71023 42085281 ~ 42102235 (-)
AMCG00009583 NA coding downstream 90489 42073910 ~ 42082769 (-)
AMCG00009576 NA coding downstream 278015 41883426 ~ 41895243 (-)
AMCG00009574 NA coding downstream 298668 41867541 ~ 41874590 (-)
AMCG00009590 NA coding upstream 51188 42226895 ~ 42229779 (-)
AMCG00009589 NA coding upstream 67681 42243388 ~ 42254102 (-)
AMCG00009592 NA coding upstream 151162 42326869 ~ 42334548 (-)
AMCG00009599 NA coding upstream 249221 42424928 ~ 42429586 (-)
AMCG00009598 NA coding upstream 253896 42429603 ~ 42429987 (-)
G57600 NA non-coding downstream 1240048 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 1396174 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1829779 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 2013650 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 2299029 39873971 ~ 39874229 (-)
G57873 NA non-coding upstream 29563 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 292478 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 302014 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 363732 42539439 ~ 42540113 (-)
G58039 NA non-coding upstream 521190 42696897 ~ 42697133 (-)
AMCG00009582 NA other downstream 117130 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 346324 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 2015787 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3335664 38827965 ~ 38837594 (-)
G57155 dner other downstream 3590438 38580285 ~ 38582820 (-)
G58025 NA other upstream 473143 42648850 ~ 42673707 (-)
G58333 NA other upstream 1306714 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 1813804 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 2326080 44501787 ~ 44512249 (-)
G58584 NA other upstream 2366187 44541894 ~ 44542809 (-)

Expression


Co-expression Network