G57964


Basic Information

Item Value
gene id G57964
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42432877 ~ 42435152 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72466
TAACAGTaacaatatacttttatttacagtttaatttttacaaatgtatatctttgcattacaataaaataaaatgttggggATATAAGAAGAATAGTTCAAGTCTagagtaaacaacaacaaaaataaaggtttaaaacCCATTCACTCCGTTGGTGGAGGATTCCAGCATGTTTGTACTCGAGGACCAGATGAGATCAGGTTTATTTGTAGGACAATGTTTGATTGCGAACGCTTGCGAGGTAAAAGTACAATTTGTGAAAACGGGCACGGCAATAAcacaaagatattaacacacacacataaacaaaaaacagctgcagCGTCCCAAGTGCGATCAACCGATACTTTTGATGTCCGATTTCCGAACGTTGAGATTGGGACGTTCTTTGGCTGTGCTGGGGGTGTCCTTCACCCTTTTCCCTTTCCCTGGCAGTGAGGAGGAACCCTTTACACACAATCAAGCCTAAAATGCAACTGGCagaaaggaatacaaaaaaaataaaatcacataaaaACCTAAACCTACAATTAAACGAAcgtccctccctcccccttcaACGTGTTGGGATTTAAACTGATGGAAAGACCAGAATGAAGGTGAGGGAGTTTGGGACACTGTTAGGGTTGGGAGAGGAGTGAGGACtttaggatttaaaataaaaagaatgaaaacactgGTATTTTTCCGTTTTGTTCCGATACTCTTTATAAACAATATTGCGTCAATGTTACAGAGCATTAAGtgacatgtatgtatgtacaaccatatttggattttctttaaagaaaaagaaataatttACTACTGGATAAAAACTCATTCATCTAATTTCACATCTTTCCTTGGCGAAACCCACGAAATGCCTACAAGTAACACACCTGAACCTTAGACTTGAACAGATAGTATGCATGAACAATGCTGATTACGGCTCAAAAGGCAGGCCGGGAGAGCAGACGCCAATCTGCCAAGACTACATACAGCCTCGAGGACTAAGGACAGTCGGGTACAAAAGGGGAGTGCAATGCTACTGCAGCCCTTCAATACCAGATTCAATCCCCAATCAATAAGCACATAAAtaataaccatttaaaaaaaataatgataaaaaacattacacacaccTGCTACACAATGCATACACATGTGCATTGccaaacatttttcacatccaTGTTGTTTCTGCTCCATTCCAGTTTACATGGCAAAGGCTTAAGATTTCATTGAATTAAAATTTTAGAAAAGAACAGAAgcaaagcaagcaaacaaaaagacattgaTGTATAAAAAGTCTCTGTAATACTATCTTCTTCTTCGCTGTACACAGGCTGGTTTCAAAGTGTCCCAAAACATTAATAGTCAAGAAGCAATggatacaaaacacaaagccagAGACTTCAGGATCTTCCTTAttgattgtgttgttttcaacCCTTTCAACCTCTAGGTGacagaaatgttacaaaaacgACAGAGAATCGTATTAAGGGATCATTAAATACTGCAAAGGGATTACCGGAATGCTAGGGATATGCTTTTGTGCGTTTTGACTAGGAAACCGGCCTAacctacagacacacaaacacactcgcGTGCGTACAATACACAGAGTCTATACATGTTTATTCCAGGGGTGGGATTGGGGTCAAGCCATTGCAAATCCTGTAAATCAGTTAtatcaaatcaatttaaaaaatgttccatAAGTAACTAGTAAaaccaggagagagaaaaaactattttcccAGCCAGAATCAGTTTTGAAGGGATAGCTAATCATTCTAAGTTTGACGAATACTGGATACAGGGCAAAGAAGCCATCGGATAAGGGCAAAAGCAGTAGGCATCAGTCTTGCTTTTCAGACGAATTGGGAATTGTGTGCACTTTGATTCTCTCAGAGGGCTCTGTGTTCTGCATCTCCAATAAATGAAACCAATCTTCACTTTCAACGAGAATCAgctttgcttttgctttggATGGAGTTTtccaaagaacaaaaacagcacaaaaaataagcaatcaAAAGGAACACTACAAAGTTTAAAAGGAAGATATAAAAGCTATATTGAAATGCACacgtttacaaaaaaaagaagaggatCCTACATTTCCACACAATAGTCAAggaaggggaagagagagaccGCCACCCCCCCCGGCCTCCCAGCCCACAACACAACTCAGGTTAATCTGCCAGGAAACCAATACAAACATGCTAGACGCATCCAAACAGAAAGGTCACTAAA
>TU72470
atgtatatctttgcattacaataaaataaaatgttggggATATAAGAAGAATAGTTCAAGTCTagagtaaacaacaacaaaaataaaggtttaaaacCCATTCACTCCGTTGGTGGAGGATTCCAGCATGTTTGTACTCGAGGACCAGATGAGATCAGGTTTATTTGTAGGACAATGTTTGATTGCGAACGCTTGCGAGGTAAAAGTACAATTTGTGAAAACGGGCACGGCAATAAcacaaagatattaacacacacacataaacaaaaaacagctgcagCGTCCCAAGTGCGATCAACCGATACTTTTGATGTCCGATTTCCGAACGTTGAGATTGGGACGTTCTTTGGCTGTGCTGGGGGTGTCCTTCACCCTTTTCCCTTTCCCTGGCAGTGAGGAGGAACCCTTTACACACAATCAAGCCTAAAATGCAACTGGCagaaaggaatacaaaaaaaataaaatcacataaaaACCTAAACCTACAATTAAACGAAcgtccctccctcccccttcaACGTGTTGGGATTTAAACTGATGGAAAGACCAGAATGAAGGTGAGGGAGTTTGGGACACTGTTAGGGTTGGGAGAGGAGTGAGGACtttaggatttaaaataaaaagaatgaaaacactgGTATTTTTCCGTTTTGTTCCGATACTCTTTATAAACAATATTGCGTCAATGTTACAGAGCATTAAGtgacatgtatgtatgtacaaccatatttggattttctttaaagaaaaagaaataatttACTACTGGATAAAAACTCATTCATCTAATTTCACATCTTTCCTTGGCGAAACCCACGAAATGCCTACAAGTAACACACCTGAACCTTAGACTTGAACAGATAGTATGCATGAACAATGCTGATTACGGCTCAAAAGGCAGGCCGGGAGAGCAGACGCCAATCTGCCAAGACTACATACAGCCTCGAGGACTAAGGACAGTCGGGTACAAAAGGGGAGTGCAATGCTACTGCAGCCCTTCAATACCAGATTCAATCCCCAATCAATAAGCACATAAAtaataaccatttaaaaaaaataatgataaaaaacattacacacaccTGCTACACAATGCATACACATGTGCATTGccaaacatttttcacatccaTGTTGTTTCTGCTCCATTCCAGTTTACATGGCAAAGGCTTAAGATTTCATTGAATTAAAATTTTAGAAAAGAACAGAAgcaaagcaagcaaacaaaaagacattgaTGTATAAAAAGTCTCTGTAATACTATCTTCTTCTTCGCTGTACACAGGCTGGTTTCAAAGTGTCCCAAAACATTAATAGTCAAGAAGCAATggatacaaaacacaaagccagAGACTTCAGGATCTTCCTTAttgattgtgttgttttcaacCCTTTCAACCTCTAGGTGacagaaatgttacaaaaacgACAGAGAATCGTATTAAGGGATCATTAAATACTGCAAAGGGATTACCGGAATGCTAGGGATATGCTTTTGTGCGTTTTGACTAGGAAACCGGCCTAacctacagacacacaaacacactcgcGTGCGTACAATACACAGAGTCTATACATGTTTATTCCAGGGGTGGGATTGGGGTCAAGCCATTGCAAATCCTGTAAATCAGTTAtatcaaatcaatttaaaaaatgttccatAAGTAACTAGTAAaaccaggagagagaaaaaactattttcccAGCCAGAATCAGTTTTGAAGGGATAGCTAATCATTCTAAGTTTGACGAATACTGGATACAGGGCAAAGAAGCCATCGGATAAGGGCAAAAGCAGTAGGCATCAGTCTTGCTTTTCAGACGAATTGGGAATTGTGTGCACTTTGATTCTCTCAGAGGGCTCTGTGTTCTGCATCTCCAATAAATGAAACCAATCTTCACTTTCAACGAGAATCAgctttgcttttgctttggATGGAGTTTtccaaagaacaaaaacagcacaaaaaataagcaatcaAAAGGAACACTACAAAGTTTAAAAGGAAGATATAAAAGCTATATTGAAATGCACacgtttacaaaaaaaagaagaggatCCTACATTTCCACACAATAGTCAAggaaggggaagagagagaccGCCACCCCCCCCGGCCTCCCAGCCCACAACACAACTCAGGTTAATCTGCCAGGAAACCAATACAAACATGCTAGACGCATCCAAACAGAAAGGTCACTAAAAGATataactttataaaaaaaaaagtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72466 True 2248 lncRNA 0.39 1 42432877 42435124
TU72470 False 2233 lncRNA 0.39 1 42432920 42435152

Neighbor

gene id symbol gene type direction distance location
AMCG00009600 gpr173,LOC108265110,LOC107549979,LOC105898994,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 17332 42414205 ~ 42415545 (+)
AMCG00009594 NA coding upstream 33546 42385499 ~ 42399331 (+)
AMCG00009591 NA coding upstream 134787 42290154 ~ 42298090 (+)
AMCG00009593 NA coding upstream 152448 42275999 ~ 42280429 (+)
AMCG00009586 NA coding upstream 161680 42266822 ~ 42271197 (+)
AMCG00009595 NA coding downstream 11805 42446957 ~ 42463730 (+)
AMCG00009604 NA coding downstream 53285 42488437 ~ 42489969 (+)
AMCG00009606 NA coding downstream 96565 42531717 ~ 42546719 (+)
AMCG00009605 LOC107602861 coding downstream 131468 42566620 ~ 42570939 (+)
AMCG00009608 NA coding downstream 160941 42596093 ~ 42599734 (+)
G57948 NA non-coding upstream 4829 42427842 ~ 42428048 (+)
G57947 NA non-coding upstream 12054 42418590 ~ 42420823 (+)
G57946 NA non-coding upstream 14372 42418141 ~ 42418505 (+)
G57945 NA non-coding upstream 14768 42415590 ~ 42418109 (+)
G57940 NA non-coding upstream 30425 42402235 ~ 42402452 (+)
G57981 NA non-coding downstream 33156 42468308 ~ 42468602 (+)
G57987 NA non-coding downstream 42563 42477715 ~ 42478112 (+)
G58008 NA non-coding downstream 194387 42629539 ~ 42636453 (+)
G58123 NA non-coding downstream 502855 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 571449 43006601 ~ 43010050 (+)
G57830 NA other upstream 354636 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 833753 41596229 ~ 41599124 (+)
G57604 NA other upstream 1438218 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2327825 40086474 ~ 40105052 (+)
G57430 NA other upstream 2483677 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 1001838 43436990 ~ 43444420 (+)
G58324 NA other downstream 1497800 43932952 ~ 43935762 (+)
G58522 NA other downstream 1951345 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2126625 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 2149410 44584562 ~ 44603609 (+)

Expression


Co-expression Network