G58008


Basic Information

Item Value
gene id G58008
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42629539 ~ 42636453 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72524
CCCCACAGCAGGGCCGCCCCATGGCCCCCACCACCCAGCAGCCCCGGCCCTCCGCCCAGGGACAGGGGGGACCGCTGGGGATGGCGGGGGCGGGAGGAAGGCCCCCCATGCAACAGAAACCGCAGCCCCCCCAGAAGCCCAGCCAGGACCACCCCAGCATGGGGATGGGCGGCCCCCCTCAGTTGAAAAACTACGGCAGCTCCCCGTTCCAGCCTTAGCCAAGACGAGGTGAAAGCCGAGACGATTCGCAACCTGCGCAAATCCTTCGCCAGCCTCTTCTCGGACTGAGGCCAACGACACACCACCACATACACATTGCCGCCAGCCatcacctccctccctccctcccgccGTGCCCCCACAAGGCCCCTGGACTCGCACATCCACTCCTCCATCCCCCCACCGCCACCCACTCCACCCGCCACCCCCAATGGAGCCTCGCGGACGCACGGAAAACAAGACACGATGGACAAGACAGAcgaagaaggaaaaaagcaagaaaataaaaaaacaagaaactacacattttcaatattctAACTGGCCAAATCGACGCGGCACGCCCATCCGCGTCTGTACGAAAGAAAAAAGGCATCATGAACGCATTCGCATCATCCACGGCgatgaacagaaacaaaaatctaaatcgccaccccctcacacacacacaaaccaggtCCCCGATTCTTCTCCAGAGGGCTCCCTATAAAGGACCACGTTACCCACCTTTCTGATacaagcatgttttttctttttagtttggttctgtttttttggggttgttttgcATCTTCTACCGTCGCttgtggaaaatgtgtgtgGCTTCTCCTCCTGCTCCCCACTTCCTCCTCTGGCAAACAAGTGTAgtgttccttaaaaaaatataatatcaaatcgaaaaaacaaaacacaaaaaagagcCCTGGATTTTCCCCAACGTTACGCTATTTTCTCcataatgcaaaatgttttggaGGCAATATCACATTCTACTGATACTTAGTATAGATGCACTGGCACAACAGTACAACACACAGTCAGACTCTGTACCAAAGCCGGCCTCAGCTTTTCTCACTGGTCTACAGTGTATCAGTGCTATTGAAGTATTCCTCGCAGCTGTTGTTCTGAAACTTGTCCCTTAGTGGTCTTTGGCTTTCTGGTGTAAGTTCAAGGCAATGCAGGAAACACACTGGACAAGCTTCAACCCAAATTAGATTTTAGCAGTCTGCGTCCCGAGCTGAACTCAGTCTGTTAAATGGCCACAGCTGTTTAGTTTCCAGAGATGCACCACAGGGAATGAAGGCGATGAACAGTTTACCCTGAAGGGATAATTGGGTCTACACTTGGTCATATTTTGATCACAGTGTGATCGAAAGATTTAGTAGCGGAAGAGGAGGTGTGTGGGATGGGGGGTGATCCACACGCATCACATAGCTAATCGTAAACTTGTTGTTGCACATCTATAGTTCCTGTAGAATGTCTGTGTCGTTACTCTGGATATGATGTTGCTGCCTCCCTCtattttcccctctctctgtttctctctctatatgaGAATCCAAGCCCTAAATCTGGAAACCTGCCATTGAAATAAGCCAGTTCGCATTTATGTCTCAGGGATGCCCAGTACTGGGTGGTTTGTGCTCCCCTCCCCGACCTCTGACCTCCGACCCCAACAACATGAACTCGAAAACACGGGGGCCAACCTGTAACCTGGGCTGCCCACACAGTGGAGCAACGACCAACCCAGCCAGCGAGGAGCTAGCGGCCACACCTTCCCTACTGCCCGAGCTCATCCAGATATGCAAATAAGCACCCGATAGAAAACGGTGTCCCTGCTGGAGCTGTCCCTCTGCAGGGGTGTTTGCAGACACAAAAACCCTGAATTTGTTCCCCATTCGGTTCCCACTGTATTCACCTGATGCAATGTCCATCTGGGTGAGGTGCAGAAAGCTCAGTCTGCTAAAGGGATGGATGCTCGagagcagaggaggaggaggaggaggaggaggaaagagaTTTCTCAGACCACAAGCGCATTCGATTCTCACCCTGCAATCTGGGAACGGTTTTCTGAAAGGACTGCAGGGAAAGCAAAAGCAGTGGTTGATTAAACATTCCAAGTTCATTTTGCTTTCTgcagtccccccccccacacacatatcagaaatgaaataaaaatcgGTCTCAGTTATTCCTTCTATACAACATAAACTCCTTTTACAGCCTGGCAACTTTGAATTGCAATTCTcctgccagccagccagtcagCCAACCGGTACCAGTCCACCTCCCCCTCCATTGGTGAGCGTCTCCAGTTTTAGGGCTTTGTAAACCTATGCCAAGTAATTTTATGACCAAGTTCCCCTTTCCCGTCTTCCCATGCTCCCCCCCCCCTGTTGTTTTCCCTTCCTCTCATTCTGTTacccttccctctctccacccTCCTCGCCCCAATCTGCCCCGAGAGACTCCATGCTCTTGCTCTCCGGGGCTAGAATTGGCATCATCTCAAGTCTTGGGGGGGGTTCTCCTCTTATCATGTAAACGATAGGGAAGAGGTCAACCGGTTAGTGTGAAGACACTGACAGGACGCCCAGCGGTCTTACGTAACGGTTTGGACTCTGTTCTGTGTAATTGAAGAAGGACATCTGagattacacattttatattggAGGGATTTCCCAGATTGATGTAGGGGACACTGATCGTGGGACGGTCCTCACAGATTAACTCAGCTTGCTTGTCTTAAGGGCGAGCTGAGTGGTGGAGATTGTGCACCACACCGTTAAAAGAAAAGAACCATCATTTTGACTGCTTCTTCCTTCACCATCCAAAGTGGACTGAACAGAAGTTTGTCCATTTTCTAACTGAAGGTTTTAGAGACGTAGGCCAACAGCACAGCGCCAGTGTCACTCTCAGGGGAAGAGAGGGCTGTGACAGGGATTGgtttaattgtctttttaataataataaatctgatGTTGGATCTATTCGTACAACACAGAATATTTTCCACTCTTTTCCTATTGTTGCCACCTTTGAATGTTGTTGCAATCCATGGGATTTGACTCTGTCTGCCTTTGCATATCAGACCAAGATacattccaaaacatttttaaaaaaatataaaaatatgcaatattctATATTAGCTTCTGTTCTGTATTTGCAGGCTTGTGAAAACCCAAAGCTAGGCTAGGCTAACTGAGCGCGTGATCATTCAATATTAAGATATCAGACCACCCTACCAACCATAACTTCCCTTTAGAAGATAGATGCAACTCCGTGAAGAAAGTTGAAAAGGAGGTGTTTTTTGAAGATGAAGAATAAGAAATATTAAGGGGAAAGCGGACGTAATGCtgtctttttattgttataGGCAACGTTTAACAGCCTTGACACTGTCACTATGCTGAACTCTAATCCCAGGCCACTGTACTGAGATGCTTCTTCTGGCCCCACACTCATTCCTCCCATCCCCCTCCCAATTAACGGATTTTGCCATCTGTAAATACACTCTCCCCTCGCGTCGAGCCCCTTGTGAATCCGAAAGTGAATCCTTGTGACAAGCGTGCATAAACGTGTAAAAGTTGTACCGtaaactgtaaaaccaaataaaagtATTGTACAGTTAGTGACTTAATATGATGAAACATGTGAAGCTTTTGTCTATTCTctttgaaaaaaactaaacgaaaaaaggaaaaaaatgttagttttttttctgtgcctgTAGTTggcgtttgtgtgtgttgatgaatgctcactgtatattttgtatcgttcgtttatttgtttacactttatttatCGAAGTTTAATGACCCtagccaaaataaatatacaataattaaaaaatatatataatgttcagCTCTTCAAATGTAACCGATTTTAaagtttttggttgttttgatctgtaaagGCAGGGACATTTGTTGAGATTATGCAATGCAGACAGTCTTCTGCTGCActataatttacatttctgaaaaaaggaAGGTCTTTTCTTATCCCCTGAGTTAAACATCTTAGGGTGTTGCATTTTTCAATAGTTCACCACTGAGTTCACTTTACCAGAtccagtttgttttcttcagtttatcCTGTTTTGTCTTGTGCAGTAACTgatgcttttgtgtgtttgtgaactGCACAGGCGAGACAGACATTCCCGTGTGaacaatatgcattaaatatcttatagttttttttgtctccGAGTATTGCAaatgcttttgttattttatttgattgtcgAGTTTATTCTATGaggttttcttaatttaatgaCTGTGTTGACTGAAATCtgaatgtacattttctgtagtGCAATATGATGTTCTGAAATTTGGatcactgtgtttgtttgtttgacgcCTCGTGTATTGTATAAAGCATTcaatttaagaaataataatttaaagaatatatatcaaTTGAATTGTAATCCATTGCCTAGTTAACGTGACCAAGCTGTTTTGTGAGATATCTACctgtacaaaaacatgtatCTTCGATGTGATCGTAGGTGTGACTAactaaatatggaaaatatattaaattattgtgcTATCAAAAATCCAAGAAAGAACTATTAAATAAAGTCTATTGTTAAAGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72524 True 4627 lncRNA 0.45 2 42629539 42636453

Neighbor

gene id symbol gene type direction distance location
AMCG00009610 NA coding upstream 822 42608497 ~ 42628717 (+)
AMCG00009608 NA coding upstream 29805 42596093 ~ 42599734 (+)
AMCG00009605 LOC107602861 coding upstream 58600 42566620 ~ 42570939 (+)
AMCG00009606 NA coding upstream 82820 42531717 ~ 42546719 (+)
AMCG00009604 NA coding upstream 139570 42488437 ~ 42489969 (+)
AMCG00009607 imp4,LOC106580531 coding downstream 5740 42642193 ~ 42649279 (+)
AMCG00009614 araf,LOC106585138,LOC106580530 coding downstream 26941 42663394 ~ 42665431 (+)
AMCG00009613 NA coding downstream 38775 42675228 ~ 42688453 (+)
AMCG00009617 NA coding downstream 71304 42707757 ~ 42722609 (+)
AMCG00009618 ccd22,LOC106572219,LOC104944807 coding downstream 208683 42845136 ~ 42856980 (+)
G57987 NA non-coding upstream 151427 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 160937 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 194387 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 201491 42427842 ~ 42428048 (+)
G57947 NA non-coding upstream 208716 42418590 ~ 42420823 (+)
G58123 NA non-coding downstream 301554 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 370148 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 576257 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 612950 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 673407 43309860 ~ 43311062 (+)
G57830 NA other upstream 551298 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1030415 41596229 ~ 41599124 (+)
G57604 NA other upstream 1634880 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2524487 40086474 ~ 40105052 (+)
G57430 NA other upstream 2680339 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 800537 43436990 ~ 43444420 (+)
G58324 NA other downstream 1296499 43932952 ~ 43935762 (+)
G58522 NA other downstream 1750044 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1925324 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1948109 44584562 ~ 44603609 (+)

Expression


Co-expression Network