G58025


Basic Information

Item Value
gene id G58025
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42648850 ~ 42673707 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72547
TGTGCCACTGATGGGCAACACTGCTCTGGAGGACCAGGGTGGGAGATCCCTGCGCCGAGCCAACCCCACTGTCATGGGAAACTTATTTATTGTGGCAAATGGTCACTGACATCTGAACATGCAGTTAATGGATGAAGTTGATCACTTGTGTACCACATCTTCACCTTCCCACCACACAGAAAGGCAAGTGGATACAAATGTGTCTGGGGCCGTTTCAGCTGAGGAATGTAAGGCCACACGTAGgacaagaaaattaaacacagcCTCAGCAGCAAAGTCAGTATtccacagttttattttaggaaTAATATCCTGAATCCTCTCCTTTATtttacaagacaaaaaaaaaaaaatctaagattTCTGGCtctgtttataattttttgttctacgtttttttttttccttaaaccatcacacaaaaatagaaacaagaAATTTGTACATtattccaaaaaacaaatgtaactgtACACAGTAGGATATCCTCTTATATTGCATTCAGCTTAAGACCCCTGTTACCTGTcccatacaataaaaaaaagatctgtAATTCACCAAAAGATATGTAACACTTTCTATTCCAATACAACGATTGCATTTGCTGCACAGAAATTCACAGAACTCTCAGTAGCCCCTGTAATAAATAGTGTGACCGGTCGCCCATGCAGTCCGTCTGCCCAGACAAGGTTGGCATCGGTTAGATGCGAAATTCAGTATTTCCTGCCGTAGACCGCAAGTGAACCAATCATTCAATGTACAGTCAAAATCTTAAaccagacacaaacaaaaatcacactgtgtacaaaaaacaaacaaacacaggaatACAGGGCATTCAACAAGTGGGAGCACGTGGAAGTTGCGTTGAGAAATGTTACGTCTGAATCGTGGTCGAATCTCACGATCGCTGCCGTGGTCGTGAGCAGCTTTGTTGCCTGCGGTCACGATATATAGAATCGACGCAGCGATAATGGTCATTAACGGACATGAGGACATCCAAATATATACTGCGTCATGCTCCATTTGAACGCAAAGGCAAGGAAAACACCTTTGTACTTAACAAATACAAGCCATTCATTGGAATTGACGTGACCCACAGCCTATGAATTGGCTCCTTCAAAGCACACGTTCAAGGTCAATGGCAACTGTTTTTCATCTCCGTACATCTGTATTCAGACACACCAGTAGCAACAGCATGTGCCAACCAGGTTTGGTCCCTAACTGTAGACAATGCTCCAGTTCTCACACATAATAAGCAGTATGTGGTCTAGTTATTTGGAATGTCTGTGTATCCCtctggattatatatataaaaaagtcaCCTATgtcttGTAATTTCAATAAGTCACTACATtgggaaaaaagctttttagACAAATGAAGATATTTAgacatttatttgacataaaaaatattcataatcCTGCATGGCAGAACGTAAGGGTTttaacaagataaaaaaaatggaaaatgaagtCCAGACAACAGCACAGGCTGATCATTAAATAACAGGCTTGATGGAGAACACCGAGATTCGCCTATATTCCAGCTTCCACGCCAAGCGGGCAGAAACTTGAACTCCTGCAGCTCGTGAGCGGATCGGGTCGGGTGCCCAGCCGAAGCTGCAGTGATGCGAGCGCTGGCTCTACTCCACACTGAGGAACTTCCTCTTCTTGGCCGTGTGGGTGAAGGGGTGCAGCCGCCACTCCACGTCCGCCGTGGCCTCGTTCTCCAGGGTGCCCAGCTTGATCATGTAC
>TU72548
TGTGCCACTGATGGGCAACACTGCTCTGGAGGACCAGGGTGGGAGATCCCTGCGCCGAGCCAACCCCACTGTCATGGGAAACTTATTTATTGTGGCAAATGGTCACTGACATCTGAACATGCAGTTAATGGATGAAGTTGATCACTTGTGTACCACATCTTCACCTTCCCACCACACAGAAAGGCAAGTGGATACAAATGTGTCTGGGGCCGTTTCAGCTGAGGAATGTAAGGCCACACGTAGgacaagaaaattaaacacagcCTCAGCAGCAAAGTCAGTATtccacagttttattttaggaaTAATATCCTGAATCCTCTCCTTTATtttacaagacaaaaaaaaaaaaatctaagattTCTGGCtctgtttataattttttgttctacgtttttttttttccttaaaccatcacacaaaaatagaaacaagaAATTTGTACATtattccaaaaaacaaatgtaactgtACACAGTAGGATATCCTCTTATATTGCATTCAGCTTAAGACCCCTGTTACCTGTcccatacaataaaaaaaagatctgtAATTCACCAAAAGATATGTAACACTTTCTATTCCAATACAACGATTGCATTTGCTGCACAGAAATTCACAGAACTCTCAGTAGCCCCTGTAATAAATAGTGTGACCGGTCGCCCATGCAGTCCGTCTGCCCAGACAAGGTTGGCATCGGTTAGATGCGAAATTCAGTATTTCCTGCCGTAGACCGCAAGTGAACCAATCATTCAATGTACAGTCAAAATCTTAAaccagacacaaacaaaaatcacactgtgtacaaaaaacaaacaaacacaggaatACAGGGCATTCAACAAGTGGGAGCACGTGGAAGTTGCGTTGAGAAATGTTACGTCTGAATCGTGGTCGAATCTCACGATCGCTGCCGTGGTCGTGAGCAGCTTTGTTGCCTGCGGTCACGATATATAGAATCGACGCAGCGATAATGGTCATTAACGGACATGAGGACATCCAAATATATACTGCGTCATGCTCCATTTGAACGCAAAGGCAAGGAAAACACCTTTGTACTTAACAAATACAAGCCATTCATTGGAATTGACGTGACCCACAGCCTATGAATTGGCTCCTTCAAAGCACACGTTCAAGGTCAATGGCAACTGTTTTTCATCTCCGTACATCTGTATTCAGACACACCAGTAGCAACAGCATGTGCCAACCAGGTTTGGTCCCTAACTGTAGACAATGCTCCAGTTCTCACACATAATAAGCAGTATGTGGTCTAGTTATTTGGAATGTCTGTGTATCCCtctggattatatatataaaaaagtcaCCTATgtcttgtaatttaatttgtttgaaatgcaagATTCTTCTGTGGCTATGTTCTTTAAACACGCCGTGCGCTACTGCTTGCCAATGGACCTCCTACTGCACTGTTATCTGCACCATTAtccaacattttaaaacctgctGCGAATTATTGCGTAGGTCATTTCAGGTCACTGCTCCGATATCAACAGCtactctgtgtgtctgtatatatatgagaaaTGCTTCAGGTTTGGCTGGTTTTGTGACCCAACACAGTAAGAAAGGTCGTGTCCATCCTGCTCCCTGGGTGACTCCTGCTGACGGGCAGATCGctaaaggggggggggaagataCTGAAATTCACTCCTCCGCCTACCCCCTGAAGAGGCCAACTGCATGGGTGTTTTATCACAGAACCCCACCCTCGCCCCCATCCCCTGCAGCACCTCCACGTTCTGATTTTACAAAGCTCCCGTAAGTCGCGAAACACGCACCTCCCGACCCAACCGGCCTGGAAAAGGGAAATCCGTCCGGTCTCTCGTCCCGAGACGCCTCCTCCGGGCTCCCACTGCCGAGTGTGACTCAAGTTTCCTGTCGcgaatgtcttttttttttttttttttttaattaagacaactataaacaaaacaaaaaatgtgtattaaggTTTATACTGTGTGGGGCCTTCTCTCTTCTTCGGTCATTTGTctccattacaaaaaaaaatgaacaatggTCCCCTTTGTTATATGCAGTGTAATGATAtcatattcaaaatgaaaaagataaaagaaaggTAAAATGACTTCTCCTTCCCTACTTCGCCTCTACTACCAGAAAACCTCCTAGTCCCTACTACCAACCCCACCTCActcttactactactactctaTCTACTACCCTACATTACTGGATTTGGAAAACACAGATCGGGGTAATCCAGcccctttttattattattttttaaatgaatttaaatctatttattcgtttttgattaaatatttctaGATTTCTATAATACATACtgctttctgaaacaaaagctGTCAGTTTTGCACCTGCTCTAAAACCTTAAACCACCATCATGGCTTTCGCTGTCCATAACTACGGATCCATCgtgttaattaaacaaaaacaaaaaaacatctacacaAAATGACAAAGATCTACAGATCTACCTAGAATGGCTTACATTTGCAACCAATCCCAGCTGCCCCCCGCTCATCCACTAACATCGCTAAAGCCCGACTGCAAAGGCCGTTCTCATTACGGGCCCAATACTGCGTCCATTACcctatgtatacatttcaagtGTAGGAAACTTCTTGGCCTTCTCCTTCTCTGCCCCCTAACTAAACGGAGAATCTACCCGCCGTTCAGCTCCAGCCTCCTTGTACCTGGACCAGGAATCAAGAGCAACGAGGCCGGACACCTTTCCTCTCAGGTCCCCTCAGGTCTCATTTGCCTGGGGAAGCGAACTTCGCCCAGAAACTCGAGGGAGCTGGTCAGACCTCGTTGGCGAGACTCTTTGGGGGTGGGACGGGGATGGTTAGGACTCCATCTCTCAGGCTGGGATTGACGGTACCTCACACATGAAAGACTCGACAGCACTTGCACTTTGCCAGATGAAAAGAGATGGGACTGCCTCCCACTCCCACCGTTGGagaaaTGCCACCATTCCCTTCCTCTTACAGTTGGGGTTATTTAAAGCAGTATTAAACTATGGGAACGCTATAGATGAGCACCGTTCACGGCATGGAGAGATTGCACACTTTCTTGGTTTTCGAGTACAGTATCACGACCAATCAGCAGAATGGCAGCAGAGGACTGACCGAGCCAGAGGTGCGCTCGCTGCACGCCGACACAATTGCACAGTGACGCTGAGACTTTAGTGTAACTTTCCCACAATGTCTTACATTTTCAGGCCTGTGAGCAAAGATGTAAGATGAACAACTGAAGAAACAGAACGAAAAACATAAACAGAAAACCTCTGTGGTGCCATAGATGTGCTTTCGGGAGAGGGGGATCGGAGAAATGCCCAACCCGGGACAGCAAAACGAGGCGCAAGACCCACTGGGATACCTTGCAAACGAACGCTGAAAATGGTCCCGAGAGCGATGCATCTTCTAAAACGCATTCTTCTCTTTGAGAGCTCCGTTTGCACGTTTTGGTCACTGAAACGCATTTTGCTGTCCTGGGTCTCTCCCCCACCCGAAATAAATTCcataaataattttttttcttttttttcaataaaaaacaataccatGGAAAATAGAAATCTATAGCAGCGTACTTTTCATGAAGATCCCACAATGTTGAATGGAGATCCCTTCAGGCCGTTCAGAACTCTTCTGCGTCTCACTCTACAGCGGCCGGCGTGATGATCTGGTCCTGGAGTCTTTTTGATCCGcttaaaacataaacacagtGCTAACAGTTTACTCTGGACTAACATCAGCTGCGGAGGACTGACAGATCTATACACAAGGACGCAACGGAGCTCCGTCGACCCGCGGACTCGAAACACCAAACCGCCACCACGTTCACCACACCGTCCCGAAACAGCATCGTTCTCGAAGCGCCCCACTCCGTTGTGGCCAGGTTTGGCGGCCTGTTTGTGAAGAGTTGTGGATTGAAGGAATCTGATTAAATTTAGGTTTTCCCCCCTCCCTCACTGAAACTGAGGGAAGCAGACATGCAGGTGTCGGACTGTGACGTGATGCGCGTTTGGCGCTCAGTCCTGGGGCTACAGGTCGTACAGCGGATGCAAAATTCCTCAAATCACTAGATGAAGCGGGGGAAGGGGGTAATGGAGCCAAATAAGTGATTGATGCACTCAATGGAGTAAATGAGAGGGTGATCTGAAGACCGCGTGGCTCCTTTTCTTCTTGACACAGTGGGCGGCCGCTCGGGCATGAGGGGCCCAATAGCAACATTCTGAGGGTCTGGTCTCTCTGATCACAGTGCTCGTTTTAACTGGGTGGGGGGTCTTCTCGAGACGTTACCCCATCTCCCCAGGCTGTCTAAGGAGACGGGACAGGCCGGCCGTGGCAGTGGACCCCCGGGTGGGCTGGCGGGGTCGTcggggggagtggggggtgtTGTTCACAGTGGCAGCAGCCGGGTGGTGTGCAGGAACAGGGGGTTGAAGTCCTCCGAGTGCACAGCCCGGTGGAGCGAGGGCTCCGAGGCGCTGCGCTCGATCTTAGGCAGCAGGTCTTGAACTTGCTCGATGGACACCAGGATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72547 False 1760 lncRNA 0.43 2 42648850 42673707
TU72548 True 4560 TUCP 0.47 2 42669127 42673707

Neighbor

gene id symbol gene type direction distance location
AMCG00009612 NA coding downstream 41202 42600098 ~ 42607648 (-)
AMCG00009602 NA coding downstream 101627 42545628 ~ 42547223 (-)
AMCG00009603 NA coding downstream 111295 42537228 ~ 42537555 (-)
AMCG00009601 NA coding downstream 130967 42510836 ~ 42517883 (-)
AMCG00009596 NA coding downstream 172886 42474886 ~ 42475964 (-)
AMCG00009616 NA coding upstream 17001 42690708 ~ 42703202 (-)
AMCG00009615 NA coding upstream 48920 42722627 ~ 42739824 (-)
AMCG00009622 NA coding upstream 117588 42791295 ~ 42797463 (-)
AMCG00009621 NA coding upstream 125338 42799045 ~ 42811220 (-)
AMCG00009624 NA coding upstream 139337 42813044 ~ 42836293 (-)
G57998 NA non-coding downstream 108737 42539439 ~ 42540113 (-)
G57988 NA non-coding downstream 170738 42477721 ~ 42478112 (-)
G57982 NA non-coding downstream 180091 42468185 ~ 42468759 (-)
G57873 NA non-coding downstream 443291 42205270 ~ 42205559 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding downstream 473143 42173258 ~ 42175707 (-)
G58039 NA non-coding upstream 23190 42696897 ~ 42697133 (-)
G58149 NA non-coding upstream 332894 43006601 ~ 43010113 (-)
G58246 NA non-coding upstream 713476 43387183 ~ 43387918 (-)
G58277 NA non-coding upstream 802126 43475833 ~ 43476088 (-)
G58336 NA non-coding upstream 857728 43531435 ~ 43568662 (-)
AMCG00009582 NA other downstream 592722 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 821916 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 2491379 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3811256 38827965 ~ 38837594 (-)
G57155 dner other downstream 4066030 38580285 ~ 38582820 (-)
G58333 NA other upstream 808714 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 1315804 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 1828080 44501787 ~ 44512249 (-)
G58584 NA other upstream 1868187 44541894 ~ 44542809 (-)
G58589 NA other upstream 1892362 44566069 ~ 44566834 (-)

Expression


Co-expression Network