G58148


Basic Information

Item Value
gene id G58148
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43006601 ~ 43010050 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72699
CAGGAACGTTGTCCATCCTAATCTGCTActgaatgtatttactgtaaaaacagaaacaagtcTCCATATCTGTAACTCAACCTAACTGGACGGCTTGCTGTGTGGGTTCGGACGCGGTCGGCCCCGGCGCCTCGGACTGGGCATGCTCACCTGCGCCGTAGGGGCCCGGGGCAGAGGGGCAGTTCCTCTCGCGGCCTGTAGGGGGGTGTGTGGAGAGGGCGCGTCTCAAAAACGTTCTTGAAGGGCATGTTTTTGATTCGACATATCATTGtggagttttgttttaaatcagatGTTTTATACATATGTGTACTTGACCTGTGTCTGCACTCCAGGCGTCCACTGCGGGGTTCAGGTTGGCGGCTGGCGGTGAACAGGCTTTAAATGATCATGTTTAAACCccgggtggggggggcggtCTGCATGCAGGACAGTGGTGTCCAGACTCGGTCCCCGAGAGCCACAGTCTAACAGGTCACACCAAATCATCCGCCTCTAAAGACTGGGCATTTCAACCCGTCTATTAGCGGAGGAGTTTCATTCTGTCCCTTAGTGGGCATTTGAAATCAGCACTgtagcccccccaccccccagccccaGAGGGACAGAGCCAGACTTTCTAAATTGACCAAAACCGACATCGGTTCCTAATAATGATGAGAGGATGGTTACGGCTGAAGCTATAATCGTAACAGGATCCTGTCGGTGCTCCTCTTGCCAAAGCTCAGGCATTCGCACTCCGCCCCCCCCACCTCGTTCCCTCTCTAATTGAACCGGCTCGGTGCGGCAGGATACGGTAATCCCTCGCTCTTGCACTCTTGTCAGCCTCCACCGGCAGAGTGCTTTGGCATCCATCGtggcatgaaaacaaaacactaaattgGTGGTGGCGAGGATGATGATTGATTGCTGATGACTGAGGCTCTCGGAGATCCTCAGAGGAACAGAGTGCTCGGATGCCGGCCCCCTGCGCTGAAGTCAGGAGGCACTGGACAGGGTGGgagggaggaaaacaaatgtttgagCGGATATGATTTGATCTGCACCCAGAATCCCACTTTGCAAACTCAGGTGTAGAAAGTGATGATATTTCTGATTTGCTGGTTTGGATGACTGCTGGCTTCAGTTAGGGAGACCAGCAGCCCACGTACTTACTGTATATTAGTGTATATGTGCCCCCCAGGCACAGAAAAGGAAATCTGCTGGTGACTGCATGTGTCGGCCCATTTAGAAGGAAATAAGACGTCCGGTGTTTTAAACAGGCCAGTCTATGGGGGATTCTCTGTGATTCTGTGCTTTGAAGTACATGGTCCACgctatttcagatttttttatcatttgtatgtctgtgcctttttttttatgtcattcCCATTACGATCAGGAGAAATTGCACTGAACGTTGTCCAAAGCCAGAGGCGTGTTTCGTTGTAGTCGACCAAGGGGCCACAACACCCCTGTAATTAATAAATCGCTCCTTTCCCACCTcctcaaaaatacaaaaatgcccCGTACGAGCGAACCCCGGTCTTCAGCAAGGTTTACCGTGGATCTCAGAATCCCAACCGCGAGCTTGCGCTGACCCTTCCTGTCGCTGTCCCTCGTCTCCCTGGTGCTCCCAGAGGACTCTCCTCTGCACCCCTCCTGTCCGCTCAGACTCGGATCCAGGCTGCAGGATCGAACCAGCAAGCGAAAAGCATAGCGACGCGGTCTCGCTTCTTATAACCGCCGAGCCGGATCCACTCCGACCTGAACTGCGCTGTCACTGTTACTGTACGGCCAAGTCGCGCAACAAAACGGCATGGCGAAAACCTCCGGCCGTGTACCGGGAGAGGAGcttgtgtaaaatgtgtagCTCGTCTCGTCACACGCTCTCTCGTCGTGATGTCTCGGTACCAGTAGTGTAACATCCTATGAATTCATTAGGGGCGAGGCGTTGTAATGAATAAACACGCGACGGTTTATTCTCCCTCCCGAACGCGCTCTAACCGCCGACAGACGCTTGTaaatttgtgtgtatgtattttttctgaacGCTAACATTCCAGCTGTGCCCGATACAAACCGCTTCTGAAGGGAGGCTCCTTAACAGATCTGTTGTCCTTGCTCCCACGCCTTCCCAAACCCGCTCCCTGCCCTGCTAACCACGCTGCCTGCGTCGTGTCGCGTCGGAGCGGGTTACCGGCCCGCCCTACCAAAGGAAACGCAGCTTCTCTGACCATTCCAGGGGGACAAAGACCGAAATGATTATACGGTGTCTGAAGAGAGGAACTCTTgtgtactgaattaaaaaaacaagtatgaTCTGTAAGTCCTTGTCTGCGTCTCATGTTTGCTgtgctgtctctctgtgttgttcTGTTGTGCTTCCTGTCGGCTCTCGACCCGGGCTGCAATgacctgctggtttctgttccaactgagctctcggtttcttaattgaaatgttaattgaaaTGATTAATCTGCGGAGTGGAACTCTGGAACGCTGGAAGAATTCCTGGgtgaatataattttatacttgATATCTCAGACTGGTTGAGATCGTTATGAAGCAAAGCAAAGTACTCGTTCGTTGAGTGGTTCAGTTAAGTCATGGGGAGCTTGGGTAGCACAGCAGAACAGTGGGGCTCCGGGAGCAACGTTGAGAAGGAAATTCCTACAGCTTCTTGTCTGGTGGTTCCAAGGGCCCGAGGGTGTGTGGTTTTCATGTGCCCTTGGGACGTCATGGCTCCGCGGATGGGAGTGAGCCGTCTTCACTGCAGGTGATTATTCGGCACATTTGACCACTGTGCCCAGACAGCTGCTAATGGAGGCTGGTCTAATTGATGCTGTAGTAATCCTGCCAGGGTGAGCGCAATGCACTTTAATTCAAAAGTAAACGGGAACAGCGACGGCCCCAGATCCACAAATAAAGTACCGAGCCTTTCTCCTAGACAGACGGGCTTGTTCTCCACTCGGCAGTGTGGAGGAAAGTCGGTTTTCCACAATGGCGATCCTGTTTCCTTCTCTCGTGATGGACGCCGGCTGCCCAGTACCGTTTCCCCGGGTTAAAACGGCGCTGCGTGATGTCACGGTGTGGCGTGTGTTCGGAGGCCGCAGGAGAGATCAGCACCCGAGTGTGTGAACCCGGGGGAATGAGGAATCGGCGAGGGAAGCTTTATAATGCGGGGCGGACGGTGGGGTTAGTTTCCCTGGCCCGCCTCACGTCTCTTTCAGGGCAGAATATTGTCCAAATGTCCCTGGTTAGCATGGAGGaggtgtggatgtgtgtgtccTTGGTAAAGCAGCTTTTGATTAAACCCTGGACGGCAAGAGAGTGGAAATCAGACGTGAACAGGTAAATATGTGGGTGGGGGTATTATTTCTCATGGCAAGCagtcctttttaaaattaatttggctTTTGTAGCACTACGATACTGTA
>TU72700
GGGGGTGGAGGTGGGGCGGGAGGCAGGAACGTTGTCCATCCTAATCTGCTActgaatgtatttactgtaaaaacagaaacaagtcTCCATATCTGTAACTCAACCTAACTGGACGGCTTGCTGTGTGGGTTCGGACGCGGTCGGCCCCGGCGCCTCGGACTGGGCATGCTCACCTGCGCCGTAGGGGCCCGGGGCAGAGGGGCAGTTCCTCTCGCGGCCTGTAGGGGGGTGTGTGGAGAGGGCGCGTCTCAAAAACGTTCTTGAAGGGCATGTTTTTGATTCGACATATCATTGtggagttttgttttaaatcagatGTTTTATACATATGTGTACTTGACCTGTGTCTGCACTCCAGGCGTCCACTGCGGGGTTCAGGTTGGCGGCTGGCGGTGAACAGGCTTTAAATGATCATGTTTAAACCccgggtggggggggcggtCTGCATGCAGGACAGTGGTGTCCAGACTCGGTCCCCGAGAGCCACAGTCTAACAGGTCACACCAAATCATCCGCCTCTAAAGACTGGGCATTTCAACCCGTCTATTAGCGGAGGAGTTTCATTCTGTCCCTTAGTGGGCATTTGAAATCAGCACTgtagcccccccaccccccagccccaGAGGGACAGAGCCAGACTTTCTAAATTGACCAAAACCGACATCGGTTCCTAATAATGATGAGAGGATGGTTACGGCTGAAGCTATAATCGTAACAGGATCCTGTCGGTGCTCCTCTTGCCAAAGCTCAGGCATTCGCACTCCGCCCCCCCCACCTCGTTCCCTCTCTAATTGAACCGGCTCGGTGCGGCAGGATACGGTAATCCCTCGCTCTTGCACTCTTGTCAGCCTCCACCGGCAGAGTGCTTTGGCATCCATCGtggcatgaaaacaaaacactaaattgGTGGTGGCGAGGATGATGATTGATTGCTGATGACTGAGGCTCTCGGAGATCCTCAGAGGAACAGAGTGCTCGGATGCCGGCCCCCTGCGCTGAAGTCAGGAGGCACTGGACAGGGTGGgagggaggaaaacaaatgtttgagCGGATATGATTTGATCTGCACCCAGAATCCCACTTTGCAAACTCAGGTGTAGAAAGTGATGATATTTCTGATTTGCTGGTTTGGATGACTGCTGGCTTCAGTTAGGGAGACCAGCAGCCCACGTACTTACTGTATATTAGTGTATATGTGCCCCCCAGGCACAGAAAAGGAAATCTGCTGGTGACTGCATGTGTCGGCCCATTTAGAAGGAAATAAGACGTCCGGTGTTTTAAACAGGCCAGTCTATGGGGGATTCTCTGTGATTCTGTGCTTTGAAGTACATGGTCCACgctatttcagatttttttatcatttgtatgtctgtgcctttttttttatgtcattcCCATTACGATCAGGAGAAATTGCACTGAACGTTGTCCAAAGCCAGAGGCGTGTTTCGTTGTAGTCGACCAAGGGGCCACAACACCCCTGTAATTAATAAATCGCTCCTTTCCCACCTcctcaaaaatacaaaaatgcccCGTACGAGCGAACCCCGGTCTTCAGCAAGGTTTACCGTGGATCTCAGAATCCCAACCGCGAGCTTGCGCTGACCCTTCCTGTCGCTGTCCCTCGTCTCCCTGGTGCTCCCAGAGGACTCTCCTCTGCACCCCTCCTGTCCGCTCAGACTCGGATCCAGGCTGCAGGATCGAACCAGCAAGCGAAAAGCATAGCGACGCGGTCTCGCTTCTTATAACCGCCGAGCCGGATCCACTCCGACCTGAACTGCGCTGTCACTGTTACTGTACGGCCAAGTCGCGCAACAAAACGGCATGGCGAAAACCTCCGGCCGTGTACCGGGAGAGGAGcttgtgtaaaatgtgtagCTCGTCTCGTCACACGCTCTCTCGTCGTGATGTCTCGGTACCAGTAGTGTAACATCCTATGAATTCATTAGGGGCGAGGCGTTGTAATGAATAAACACGCGACGGTTTATTCTCCCTCCCGAACGCGCTCTAACCGCCGACAGACGCTTGTaaatttgtgtgtatgtattttttctgaacGCTAACATTCCAGCTGTGCCCGATACAAACCGCTTCTGAAGGGAGGCTCCTTAACAGATCTGTTGTCCTTGCTCCCACGCCTTCCCAAACCCGCTCCCTGCCCTGCTAACCACGCTGCCTGCGTCGTGTCGCGTCGGAGCGGGTTACCGGCCCGCCCTACCAAAGGAAACGCAGCTTCTCTGACCATTCCAGGGGGACAAAGACCGAAATGATTATACGGTGTCTGAAGAGAGGAACTCTTgtgtactgaattaaaaaaacaagtatgaTCTGTAAGTCCTTGTCTGCGTCTCATGTTTGCTgtgctgtctctctgtgttgttcTGTTGTGCTTCCTGTCGGCTCTCGACCCGGGCTGCAATgacctgctggtttctgttccaactgagctctcggtttcttaattgaaatgttaattgaaaTGATTAATCTGCGGAGTGGAACTCTGGAACGCTGGAAGAATTCCTGGgtgaatataattttatacttgATATCTCAGACTGGTTGAGATCGTTATGAAGCAAAGCAAAGTACTCGTTCGTTGAGTGGTTCAGTTAAGTCATGGGGAGCTTGGGTAGCACAGCAGAACAGTGGGGCTCCGGGAGCAACGTTGAGAAGGAAATTCCTACAGCTTCTTGTCTGGTGGTTCCAAGGGCCCGAGGGTGTGTGGTTTTCATGTGCCCTTGGGACGTCATGGCTCCGCGGATGGGAGTGAGCCGTCTTCACTGCAGGTGATTATTCGGCACATTTGACCACTGTGCCCAGACAGCTGCTAATGGAGGCTGGTCTAATTGATGCTGTAGTAATCCTGCCAGGGTGAGCGCAATGCACTTTAATTCAAAAGTAAACGGGAACAGCGACGGCCCCAGATCCACAAATAAAGTACCGAGCCTTTCTCCTAGACAGACGGGCTTGTTCTCCACTCGGCAGTGTGGAGGAAAGTCGGTTTTCCACAATGGCGATCCTGTTTCCTTCTCTCGTGATGGACGCCGGCTGCCCAGTACCGTTTCCCCGGGTTAAAACGGCGCTGCGTGATGTCACGGTGTGGCGTGTGTTCGGAGGCCGCAGGAGAGATCAGCACCCGAGTGTGTGAACCCGGGGGAATGAGGAATCGGCGAGGGAAGCTTTATAATGCGGGGCGGACGGTGGGGTTAGTTTCCCTGGCCCGCCTCACGTCTCTTTCAGGGCAGAATATTGTCCAAATGTCCCTGGTTAGCATGGAGGaggtgtggatgtgtgtgtccTTGGTAAAGCAGCTTTTGATTAAACCCTGGACGGCAAGAGAGTGGAAATCAGACGTGAACAGGTAAATATGTGGGTGGGGGTATTATTTCTCATGGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72699 True 3427 lncRNA 0.52 1 43006624 43010050
TU72700 False 3402 lncRNA 0.52 1 43006601 43010002

Neighbor

gene id symbol gene type direction distance location
AMCG00009631 NA coding upstream 3279 42977129 ~ 43003322 (+)
AMCG00009626 mon1b coding upstream 34223 42960967 ~ 42972378 (+)
AMCG00009628 NA coding upstream 79544 42914780 ~ 42927057 (+)
AMCG00009627 nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043 coding upstream 93109 42891698 ~ 42913492 (+)
AMCG00009625 NA coding upstream 118110 42887108 ~ 42888491 (+)
AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding downstream 41223 43051273 ~ 43052391 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding downstream 95429 43105479 ~ 43112950 (+)
AMCG00009636 NA coding downstream 179555 43189605 ~ 43213919 (+)
AMCG00009639 NA coding downstream 242152 43252202 ~ 43253062 (+)
AMCG00009634 NA coding downstream 248470 43258520 ~ 43266899 (+)
G58123 NA non-coding upstream 67727 42938007 ~ 42938874 (+)
G58008 NA non-coding upstream 370148 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 528489 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 537999 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 571449 42432877 ~ 42435152 (+)
G58178 NA non-coding downstream 202660 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 239353 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 299810 43309860 ~ 43311062 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding downstream 308866 43318916 ~ 43324579 (+)
G58291 NA non-coding downstream 668301 43678351 ~ 43680953 (+)
G57830 NA other upstream 928360 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1407477 41596229 ~ 41599124 (+)
G57604 NA other upstream 2011942 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2901549 40086474 ~ 40105052 (+)
G57430 NA other upstream 3057401 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 426940 43436990 ~ 43444420 (+)
G58324 NA other downstream 922902 43932952 ~ 43935762 (+)
G58522 NA other downstream 1376447 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1551727 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1574512 44584562 ~ 44603609 (+)

Expression


Co-expression Network