G58214 (dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111)


Basic Information

Item Value
gene id G58214
gene name dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43318916 ~ 43324579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72773
atattttattatatttatatcacaAGCTATACATAAAGAAAAGCAGGGCTGGCCGGCACTGTGGCCAGAATTGTTAGACAGTTCACGGTTTTCACTGCCACTGAGAGATCCGGTTGGCTTTATcaagtattgtttattttccaatgtttttttttttttttttttttaataggataaCTTCTGCAATCAGACAAATGAAGACTCcgccctgttttttttttttttatataatcttgCCTCCCATTAAAGTTGACCGAACTCCATTCCCAACTCAAAAGCAGTCTTTAACGAGACGTGTCCCACAAGCACACCCGCACACAAAACAGTCTGCACTTGTGCCACTTCACCAGAGATCTGTGCAACCAAAAATCAACGTCTGAACAGTCTTTCACATCACATTCTTCCAAACAAAataacgagaaaaaaaaaattacatagcGTGAAGACGAGATGTTTTCAAGTTTAACGTATATACACTACtgctttcattacatttttacaaaggTCTTTGGATCAAAAAcaaattttacttattttttgcttttaaggGAAGGGTTAGGGCTTTCAGTTGATGGCGGTCAAGctgtttatttcaaatgcataaTTTGGAACCAACAGTCTGCAACCGAACATTGCAGAATCACCGACCGCCACTGGCTATAAAACTCCGCCCATTTAGCCTAGGATTTGAAATGACAAGTCTTCCAAAACGCAGTGAAGCTTTCCCCCACAGTTCTACAGCCGTACACAGTTTATTCAAGACATATTAATGTAACAGTCTATAAATAAGATTGACTGGACAACTCCCTCTTGCAATAACAAAGGGTACTCAAGGATAACGTTCAAATttcaccataataataataataataataataaaaagctttcTTCCAAGCTTTTGAACCTTCTCCAGTAGACTTTATACAGCTGTGGATAAACAGTCACACAGCAAACACACTCAACCAAGTTAAATTCTCAGAACCTTTTGAAAAGTATTCAATTGTCCTACTAAATTATTCTGTGAGAACCGGATTAACATTTGCCACAGAAATGAACTTTCCGTAGTGTGCAAACAACTATATTAGTGTCAAATTATTACAGGGGGTCATCTTGTactgcatacacatacacacatacaaactgaGCACCTTAGCACCTCCTGCCCTCCTAGCTgacactatattaaaaaaatatattaaaatcctaatgccaaaaaaatacaaaacatgccTTTGCAGGTGGTACATTTTCACCAATATGGGTTATCTATCTGTGGATGTTATTTCAATGCTAGAAAATAAAGTGCTGTGGAGTACAGAGTTGTATTTCTGATTGTTTAGAGACTTCCAGTCCAGTTTATGTTGTCTCAGTGGGCAAGGAGTTACCTTTTTAAAACTTCTACAGTTCTTTCGATTGCAAGAAGGGTTATTAGGGTCTCAATTATCTCTTTAGCGACTGTACAGGTTTCCTACAGATCACAGACGCAGAATGATGCTCATTTCGCACTGGTTTCTTCAGCGGTCCGAATCAGATCTACGATCAGCCCTGGTAGTCCTTGATGCCCCACGTTCAGGGAAGTATGGGACAAGGAGCCTGGATAAGAGAAGTTTTCAAAGACGGACAGAATACATTATCACAAACTCCTTCAGACACTATGAGCAGTAGCCGGGATGCAATGGGGCACTTCTCTCTCACGATGTAGAAcacaatataaaagaaaacgcaaattaaaactgaagtgTTAAAAGCATAGCTAACTGCACGATACAGGGCTTTTAAAAAGGTTTGCAACGGCACGAATGCCTGCAGCACTTTCCATTTAATCTGTACTGCATAAAAATAATTCATTCAAACTCAAAGTGCCAATCCGACACAGGAACATTTGGACAATTGATCTGCAGAACACTTTAGTTTCTTGATTCCATATACTTTACAAAGTAGAAACTTGGAACAAGTATAAGACCTACAGGGGTTGCAGGGTTtactaaacaacaaaaaagcttcCAATTAAACTCTCTGGTCAAAAACCCTACAGAGTCTGCTAAGTCCTTATGAACAAACCCAACTGAGGTGGCTGCAGATGTTAAGTAGTCACGTGGTGTTTTTAAGTGGCTAATCAGGTCTAAGTGGGAGCCACGCTTGTTAATGACATTACCCTCAAACTGCACCAGGGAGAAACACGTCAATGGCCAGGGTTTGGATGTTGGCGAGATGGTGAATGGTGTCGTAGCACAGCTGTAAACTGTTGAAAACTGAGCGGACAAAGTGAGAAGACCAATGAAGTTACCCAAGTCGAACTGGACCGGGAGAAGAAAGGGGGCAAAAATATCCAGAAATCTGCAGCCCTGGAACACAACTGACAGCAGTCGGCAAAGATTGACTACAGCCAAAGTGTCACAGGACCGTCTGCTTTTGAGTTCCTCCAGAGCTCTCACCGACACCGACATGACcgaattaaatacaatttaaattaatgttttaaacattttttaggTTTCCAATAAAATGAGCAGGGCTCTTTGGGACCAGGAGTGAGATTCAGATCAACACTGGACAAATATTAGGGCAGGTGAGGGTAGAAGTCATATTCTGAAAGGGGGGGGGATCTATTTTGCAGGTGGTTATTATGTTGCTGCAGAAGTGTTCTCCCACATTAACCTCACTATGACATCATATTGGAAGTGCGTTGACACACCCCTACTGTAgcacaagtGTATAGGAAAGGAAGGGGGAGAAAATTAAAGCACgcgtgtatatataataatccaTGGCATAATTGCCTTTAACCAAACCACTGTATTAAGAGAGAAGCGGTTGAATGGCAGTTCTCTCATCTTGCAGAACAGTGTGTGAACGGGGGATTGGGCGGGGGAGCCTTCTTCTGAAGGAACCGATAATGATACTATATCACATATGAAGTAGCTGCAGATCCGAGACCCCACTGCAGGCTCGGACAGCAGCGACCCCCGTGGAGCACTTCAACACAGTCAAACGACAGCACAGGGGACAAAAACACGTCTTGAAAGCCTCCGAAACAAGAGGTAACTTTCAACTGACTTTGAACTCTCTCACCCTTTCAGGCTGCTGCCGCTATGAACAACAACTCTTTGCCTCGGACACGATTTTCCACTTTTAAGAGCAGATTTCTACAGGACTGATCAACAGTACGTTTTCACAAAGCAGAAGTCTAACTCAATGGACGAGTGTTTGGATGATGATTAGAAACTGTTCAAAGTAGGCTTTACCTCACATATTTCCTACATCTACCTAGTTTTATTTCAGAGCAGATTTGGCACCATGGTTAACGTCAGTTGACCCTCAGTTGTTAAACCAGACAGATCTGgcaaatttacatttaatgaaaagacCCCAAAGGCTCAAACACATTTCCCATAATCGTTTTCATTTGGTCTTTCTCTGCCAGCGTCCAAACCGTTGGTGTATAATGACGCAAACCAGTTTTACAGAAGACTGGAGGGATTTGGAAAGTTTGAGACTTGAACTAAACTGTCCTCGAAGTCTGAGTAGCTACAAATTGTGTTGTCACCAGCTAATTCACAGGAAGCTCTGCAATCGGCAAAATCACTCCATTCTAGCAAGAGCACCTCGACTGTCCCGCCTTGTGGATGAAGGAATTCACAGGCTTCAGTGACTACAGTCCGTCAGGATAGACTGCATGGGCTAAACAAGCTTCTCACCCTCCGCACAGAGACACCCTCCAGCACGGGTTACTAGGCATGAACTGACAGGTGCTAAATCACATGTGTTCTGCGTTTACACTATGCCTCTAACTGAGGTATAATTGGATGACCTGAATACGTTTCAATACAGTGGTAAACCTTTCTTAACCCACATGTATTATTTCTAACTGATCTCTGGAAAGACTGGCAAACGGGTATTCAGGCATctaggtgtgtgtatatatgctgCACACAGATTTTCCAGGCCTACAAGAGTTCCCACATGAGCTGGACATACTTCCAATAACCTAGAAAACATTTTCACCTTCACTTCTACAAAGTTAATCAAAAGTTACCTCCCGTTTCTTCAAAATCACCCCTGCAGAACTCCAACCTGCCTTGGTCTTCCACAACttcatacgcacacacacacacacacacacgcacacgcacaccacacacacgcacactgagcGACTCCTGTAAATggcatgttatttatatatgtacaccAGGGGAGCCTGCGTGGGGGTCCAATGTGGCTCCTAGGAGGCTTCCCTGGCTCCGGCGCCCCCTATGATCAAGTTGCGGAGGAGTTTCCGCCGGCCGGCCTGGTAGTCCTCCTCGTCTACGTTGACCAGCAGTTTGATGGCCTCGTGGCCCACGGCCTGCTTCAGAGAGTCGGTGATGAACACGCCCTTGAGGGCCTCCAGCAGGGAGCCATTGATGTAGTCCCTCCAGAACGCATCCAGGTACGTAAGTTCTGAGAACTTTATGTCGCAGATGATGGAGCCGAGGTCGCGCGACTTCAGGATGGTGTTGGCCTGGTTGAACCTCTCGAACTGCCGCTCCAGGGCCTCCTGCTTGTTGGAGAAGACGTTGCCCTGCAGGGCCGACTCGTGCTGGCAGTACTCTGCTCGCACCCGCAGCC

Function

symbol description
dedd Predicted to enable DNA binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DEDD (death effector domain containing).

NR:

description
PREDICTED: death effector domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72773 True 4611 lncRNA 0.43 2 43318916 43324579

Neighbor

gene id symbol gene type direction distance location
AMCG00009640 NA coding upstream 415 43315628 ~ 43318501 (+)
AMCG00009635 fam50a coding upstream 45544 43267927 ~ 43273372 (+)
AMCG00009634 NA coding upstream 52017 43258520 ~ 43266899 (+)
AMCG00009639 NA coding upstream 65854 43252202 ~ 43253062 (+)
AMCG00009636 NA coding upstream 104997 43189605 ~ 43213919 (+)
AMCG00009646 NA coding downstream 92252 43416831 ~ 43424850 (+)
AMCG00009656 NA coding downstream 347190 43671769 ~ 43720150 (+)
AMCG00009654 NA coding downstream 412018 43736597 ~ 43740863 (+)
AMCG00009653 NA coding downstream 418875 43743454 ~ 43748128 (+)
AMCG00009655 tbc1d25,LOC104943506 coding downstream 426904 43751483 ~ 43756359 (+)
G58215 NA non-coding upstream 7854 43309860 ~ 43311062 (+)
G58195 NA non-coding upstream 69275 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 105888 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 308866 43006601 ~ 43010050 (+)
G58123 NA non-coding upstream 380042 42938007 ~ 42938874 (+)
G58291 NA non-coding downstream 353772 43678351 ~ 43680953 (+)
G58304 NA non-coding downstream 549202 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 585009 43909588 ~ 43915760 (+)
G58319 NA non-coding downstream 596895 43921474 ~ 43926631 (+)
G58467 NA non-coding downstream 844906 44169485 ~ 44169789 (+)
G57830 NA other upstream 1240675 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1719792 41596229 ~ 41599124 (+)
G57604 NA other upstream 2324257 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3213864 40086474 ~ 40105052 (+)
G57430 NA other upstream 3369716 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 112411 43436990 ~ 43444420 (+)
G58324 NA other downstream 608373 43932952 ~ 43935762 (+)
G58522 NA other downstream 1061918 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1237198 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1259983 44584562 ~ 44603609 (+)

Expression


Co-expression Network