G58215


Basic Information

Item Value
gene id G58215
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43309860 ~ 43311062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72776
TCCAGGAGTTACGCAACATTGAGTGAGTCTGGACTGGAAAACCGAAAGCTCACACACATTTAAGCTCTCCGTCAGTGGCAGCAGAAAAGTATTGTTAGGCCTGGCTAGTTTTTGGTTAATGGAGTATATAAAGTAAGACATTTTGGAAGAGGGTACAGAACTGAAGCAACAGAAGCAATCTAGCCAACTAACTGTTGCTGCGTGTCAGTTGCAGCTCTTTCAGGAATCTGGTGCTACATGTTGTAATATTAATAGTGTGCCAAATGTGACAGAAATTTACCGTGATTATCACAGACCTGCAGACTGAATTATAAAAGCACAGGCTACAATGTGGCTGTTCCCGGCTGCCACACACACCCTCCTCGCTCTCTTAATGTCCGTAATGTCCACATGCN

Function

NR:

description
PREDICTED: immediate early response gene 5-like protein

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU72776 True 395 lncRNA 0.44 2 43309860 43311062

Neighbor

gene id symbol gene type direction distance location
AMCG00009635 fam50a coding upstream 36488 43267927 ~ 43273372 (+)
AMCG00009634 NA coding upstream 42961 43258520 ~ 43266899 (+)
AMCG00009639 NA coding upstream 56798 43252202 ~ 43253062 (+)
AMCG00009636 NA coding upstream 95941 43189605 ~ 43213919 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding upstream 196910 43105479 ~ 43112950 (+)
AMCG00009640 NA coding downstream 4566 43315628 ~ 43318501 (+)
AMCG00009646 NA coding downstream 105769 43416831 ~ 43424850 (+)
AMCG00009656 NA coding downstream 360707 43671769 ~ 43720150 (+)
AMCG00009654 NA coding downstream 425535 43736597 ~ 43740863 (+)
AMCG00009653 NA coding downstream 432392 43743454 ~ 43748128 (+)
G58195 NA non-coding upstream 60219 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 96832 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 299810 43006601 ~ 43010050 (+)
G58123 NA non-coding upstream 370986 42938007 ~ 42938874 (+)
G58008 NA non-coding upstream 673407 42629539 ~ 42636453 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding downstream 7854 43318916 ~ 43324579 (+)
G58291 NA non-coding downstream 367289 43678351 ~ 43680953 (+)
G58304 NA non-coding downstream 562719 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 598526 43909588 ~ 43915760 (+)
G58319 NA non-coding downstream 610412 43921474 ~ 43926631 (+)
G57830 NA other upstream 1231619 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1710736 41596229 ~ 41599124 (+)
G57604 NA other upstream 2315201 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3204808 40086474 ~ 40105052 (+)
G57430 NA other upstream 3360660 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 125928 43436990 ~ 43444420 (+)
G58324 NA other downstream 621890 43932952 ~ 43935762 (+)
G58522 NA other downstream 1075435 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1250715 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1273500 44584562 ~ 44603609 (+)

Expression


Co-expression Network