G58291


Basic Information

Item Value
gene id G58291
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43678351 ~ 43680953 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72871
CCAACTGCAAAAgacctttattgtattttaaactcaaaatgtaatagtcaacataatatttgtatgcatccaattaaacacaattgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggtatttatttatatatttatttatttgttaaattatttatttttacttaaaagtgtattcaaaatgaatacaagaTTTCCACTTGATAGACCAGATTATCACTTAAGTCACTTAGGTctacatcacttaaaattatGGTATTTGTTAACAAAGTgttaatttccagatatctgcTGTGGTAACATCTACCATCTAGCTATCTTTTTTGAGTAACGTGTTTACAGAATTCACAAATGTATATGCACATACTTCTCCCTCATGATCCCAATTACATTGACAAACCAACATTATAGCAATGTaatactaaactaaactaaataatagTTCCAGAAATAAAAGTGCACATTTGTGTTGcttaaatctgtcctgtgtagccATGTGTGTTAACAGCATGAATATACAGGGGTGCACATAACTGGTGCGCATGTGCAGCCTAAATCACAAATGTGCGGGCAAATTTGTTTTGGGATTCGCACCAACTACCAAAGCtgtttctatgtattttttccatagttaataaaatgttgtggggaaaaaaaattcaaaaaagcagcagaaattaaataattaggcACACAGGGCGACATTCCCAGACTGGGAATTGACGGGCccatcaaacaaaaaaattgacTATATAGAAATAGGGCAGATGAAGTCAGACAATTCAGTGTTGAATTCACACAGGCTCTGTTTTTAACTAGGAAGGGCTAGAGGTCGCAACAAGGGGGACTTCACTGACATTGGAAGCAAATTATAAATTTGTCAAATAGAGATGGACTCAGTGATAAGGAAACTGAAGTAACAGGAAGCAGCATTTGTAAATATCTCCCACATTGCAACAACTGTGAAAAATGGATGTAATAGCTGTTGAAACACTCTATATTTTAGtacaagcattttaaaatcactggTTCTTGCAATTTCATACATGCTATGTCCATAGAACACCACCTTTTTCGAcagttggtttattttttacactcCCTATAGTGATGAGTATGTTGACTGTAATAATACAAAGTAACTGTACTGTAGACAATGgagaaaattaatgtatttaaaacgtATTAAAACTGTGTAGAAAGGCATCCAGGGTAACATCATACAAAGCACACAGACATGGTGTTTTAGACTGATCAGCCATCAACATGGTACAAAAGCTGATATCAATATTTGTGATGAACAGTTCATGAGGTCATTGATatgaaaaataagcaattttggttttgtttgtttttggctcCTGCCATTAAGTTGTGCTAACTGCTCTTGTTTCACAGATTCTTTTGTGAACTGATTTGCAGGAGCTGTCGTACCAACTCCattccagacacacacaattctCCCCTGAAGGATCTTCCACCATCCAGTTATCAGGTTCGCTGGGCTGACCGGTTCTCTGGAGCCAGTAT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU72871 True 1550 lncRNA 0.36 2 43678351 43680953

Neighbor

gene id symbol gene type direction distance location
AMCG00009646 NA coding upstream 253501 43416831 ~ 43424850 (+)
AMCG00009640 NA coding upstream 359850 43315628 ~ 43318501 (+)
AMCG00009635 fam50a coding upstream 404979 43267927 ~ 43273372 (+)
AMCG00009634 NA coding upstream 411452 43258520 ~ 43266899 (+)
AMCG00009639 NA coding upstream 425289 43252202 ~ 43253062 (+)
AMCG00009654 NA coding downstream 55644 43736597 ~ 43740863 (+)
AMCG00009653 NA coding downstream 62501 43743454 ~ 43748128 (+)
AMCG00009655 tbc1d25,LOC104943506 coding downstream 70530 43751483 ~ 43756359 (+)
AMCG00009658 camkvl,LOC101077320,LOC105006803 coding downstream 153930 43834883 ~ 43852529 (+)
AMCG00009659 uba1 coding downstream 178128 43859081 ~ 43873704 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding upstream 353772 43318916 ~ 43324579 (+)
G58215 NA non-coding upstream 367289 43309860 ~ 43311062 (+)
G58195 NA non-coding upstream 428710 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 465323 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 668301 43006601 ~ 43010050 (+)
G58304 NA non-coding downstream 192828 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 228635 43909588 ~ 43915760 (+)
G58319 NA non-coding downstream 240521 43921474 ~ 43926631 (+)
G58467 NA non-coding downstream 488532 44169485 ~ 44169789 (+)
G58510 NA non-coding downstream 644198 44325151 ~ 44325573 (+)
AMCG00009647 NA other upstream 233931 43436990 ~ 43444420 (+)
G57830 NA other upstream 1600110 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2079227 41596229 ~ 41599124 (+)
G57604 NA other upstream 2683692 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3573299 40086474 ~ 40105052 (+)
G58324 NA other downstream 251999 43932952 ~ 43935762 (+)
G58522 NA other downstream 705544 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 880824 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 903609 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 951797 44632750 ~ 44651967 (+)

Expression


Co-expression Network