G58324


Basic Information

Item Value
gene id G58324
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43932952 ~ 43935762 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72919
CAGGTGCTGACGATTCAGAGAGAATCTGACACAGAGCCATGTACCCCCGTCCCACTTCAGTTGTAAAACACATTGTGCATTCACGAAAAAACAATCAAGCGTCAgaagtattttcttttgaacCATAAATCCCTAGCAATTGCTTAAGTTTATAACCCCCCACCCCGGCACCTCCACATTTCATCTAACATTATTCTGTATAGGAGACTTTCCAAACGCACACTAGCATAGACATCAAGAGAACcacacattgttattttatcattaatatttttttatttatcctcAATCCAAATAATCTCTGAGCACACATTAAAGAGGACTTAAATTAGGACCAGGGTGTGCAATGGGAAGAGGTGAATCTGGGTGGCAGCAGCTATCGCACCAGAGGAGACCAGCGCTCATGACCGAACATACAACGCACTGCCAGTAGGGTTTAGGCATCAGCTAATCGGGCACAGCAAGAACACCCTTTCTGAATTCAGCAGGTGACAGTCCTCGACGTAAAGAAATGGAAAGCAGGGTAGTTGATAGaggatgtgttttttattaaggGCATCtaatcaaagaaataaacagattCTCTTGGCGTGCATTGTCCATTGCAACAGCTGTGACACTCCAGAGCTGCAGTCACTCCTCCCTGCTCACAGGGGGCAGTACGATCTTGCTGGGGTCATAGTAGTTCTCCTCTATGAGGGGGAGCCCTTGTGCCTCTCTTTGCTTGATCACCCGCTCTGCCTCCTGCCGAGCCCACTGCCtcatCCATGGTCAGGGAGGTAGTGAATAAAGGTGCCCCCGAGCACAATAGCCACAGAGATGCCAAAGAAGAACACTGTCTTCATATTCCACTCGTCAACGTGAGGGTCCTCGTGGAAGCCATGTCCGTGGCGGTCCCCGTGTCCGGCCGGCTGCAGGTCCGACACCGTAGCCGACCCCGCCGCGCCGGGAGAGCGGCTCTGCGACACCAGCCGAGCCGCGGACAGCTGGGCGAGCCGAGCCCGAGCCCAAGCGGGCCAAACCCGCATCAACCGAGCGGCCATGTCTCCCGCACACACAGCCTCCGACCCGGATACGGAAACCGGCGCTGCGCTTTACTGTCGGAGGTCAATAAAGCGGGTATGAAATGGTCGATTGCAGTTTTGTGAAAAGCTGGCGATGGGGCGGTAGGGTCAGCACGGTGCTCTGTACTGACCTAGAAAAGAtggtaaatcacaattacagcACACATGGCCGCTGAAATGAGTCCCGTCTTTCCACTCCGTTCCCAATGTTTCAGAACCggctgctgccctctagaggaaACACGGGACAGCGTCTCTATTGAGCGGCTGCACAACCTGTCCCGGGACCAGGTCCGACTGAGTCTC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU72919 True 1370 TUCP 0.52 3 43932952 43935762

Neighbor

gene id symbol gene type direction distance location
AMCG00009660 NA coding upstream 30187 43897866 ~ 43902765 (+)
AMCG00009662 NA coding upstream 42481 43880029 ~ 43890471 (+)
AMCG00009659 uba1 coding upstream 59248 43859081 ~ 43873704 (+)
AMCG00009658 camkvl,LOC101077320,LOC105006803 coding upstream 80423 43834883 ~ 43852529 (+)
AMCG00009655 tbc1d25,LOC104943506 coding upstream 176593 43751483 ~ 43756359 (+)
AMCG00009661 NA coding downstream 4531 43940293 ~ 43951629 (+)
AMCG00009670 NA coding downstream 42830 43978592 ~ 43992050 (+)
AMCG00009668 NA coding downstream 71152 44006914 ~ 44013300 (+)
AMCG00009667 NA coding downstream 77964 44013726 ~ 44022254 (+)
AMCG00009669 NA coding downstream 89782 44025544 ~ 44051535 (+)
G58319 NA non-coding upstream 6321 43921474 ~ 43926631 (+)
G58317 NA non-coding upstream 17192 43909588 ~ 43915760 (+)
G58304 NA non-coding upstream 57229 43873781 ~ 43875723 (+)
G58291 NA non-coding upstream 251999 43678351 ~ 43680953 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding upstream 608373 43318916 ~ 43324579 (+)
G58467 NA non-coding downstream 233723 44169485 ~ 44169789 (+)
G58510 NA non-coding downstream 389389 44325151 ~ 44325573 (+)
G58513 NA non-coding downstream 392509 44328271 ~ 44360062 (+)
G58527 NA non-coding downstream 477510 44413272 ~ 44483247 (+)
G58666 NA non-coding downstream 957083 44892845 ~ 44893078 (+)
AMCG00009647 NA other upstream 488532 43436990 ~ 43444420 (+)
G57830 NA other upstream 1854711 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2333828 41596229 ~ 41599124 (+)
G57604 NA other upstream 2938293 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3827900 40086474 ~ 40105052 (+)
G58522 NA other downstream 450735 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 626015 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 648800 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 696988 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 814414 44750176 ~ 44760058 (+)

Expression


Co-expression Network