G58377


Basic Information

Item Value
gene id G58377
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43873781 ~ 43875739 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72982
TCACtttaacaatgcatttatttttatttagattaaagTTATACATATTTCTGGCCACCAGAAGGTATCCTGGGTGTTTTGTGACCAGGTCTTTGATTCTAATGATTCGTTGACAAAACACTGGCAGCTTTGAGTGAAATCTCAACTCTCCATCCCTTCCACAGCCTGCTGTAAGTAACATTACTGGTGACCAGTGGGTGTAATGGTCATGTATGAATTGTAATCCTTCAACATTTGGCCCCCCTCTTCTCATTGTGGAAATCTAGGGAATTTGAGTGTTTGCTTGTGACCTCTCAGTGAAGAGATCAGCATCATCTATACCGTGTAAAAGGCTAAATATGGTGTCAAGTTACTCTAACTTAAGTGTTTTGGACTCTGAGCTCTCAATTTAAAGAAACTAAAGGTaagggattaaatcaaattttataaaaatgttagaAGGCTGGTGGTAATGGGAGCGGCTGTCTGAATGTTTGAGACCTGGAGGTTGAGCATCGTGCTCCGACTGACGATCACAGATGAAGGGAAGTCGTGTTTGGACACAACATGCATCGCAGCagtaagaaaacacaaaagccCACGTGTCTTTTACAGCTTTATTCACTGTCACACTAAGTGCTCCTATTACAGAATACTCTCGTCTtagtattaatttgttttactgtaacgTATCTGGAGTTTAACAAAGTAGAAAGAATAAGAGGTCAAGTCTACAAGGTGTGCCAGAGTTctgaccaaaaaataaaatacaaaataaacaaaaaacccTTTATCGTGCGAGCCCCTGTCCCTTCACCAAAAACAACCAATCACAGGAAAGGAATATTCACAAACCAAACCGCAGCTCCAATCAGGTTGGGGTTGGGGAGGGGCTTGCGGACAGGTGAGCTTGCTCCGCAGTTTAAAACTCCCCAGTTACCAATCACACTTTAGTGAAGCTCTGCgttaataaattaaagtgtaaTTTGTTCGAGGATGTGGGAACTGGTTCTTTAATAAAATCTTGGGAGGGAATCAGACTGCAGCTTTGCTttgctgaaggaaaaaaaaattatatgaaagCCGACATCTAAGCAAAGATACAAATTAAGCTTTTTagggaaataaaaacacccCTAGGACAATCGtttgattttcagaaaactGCCTGCATCGATTCTTGCAGATTCCCAAGTAGTGCAACTAGAGTACGAAGCATTTGGTGAATGTGAAAGCGTGGGGCTGCAGTGGGTCTGATCAGAGCGAGCTGCTGTGTGGGGCGGGGCAGGGTGGGGATGTCCCGGAAGGCACAGAGCTGAAGAGCGGGGGCAGCGGGGAAGTCGGCCTCCACAGCCGTGAACGAGGACTTCCCGAAGACCTGAGCGTCCGAGACGAGTCGGACAGGGAGGTTTTCGCAGGAGGTAGAAAGTGAAGGCATGCAGAATTAGTCACATTCCCCTCCTCCCTGAACCGGTGAATCCAAGAGAAACGGTAGGGAACCGTAGAGCGAAGCAGCAGAGAGAACTATGGGTAGACGGGCTGCAGCGCTGAGACCAGACAAACAAGACCAAAAGGGCATTAGGGTGTGGTAGCAGtgttgggagggggggggggtttaatTGCCTAAGACGGAAGCATCTCTGGATTGTGAAGACGGGCGCCTGCGTCAGGTGTGGCCCCAGCTCGTCCCCGGCCCAGGCAGTGCATCAGCCCGGCCCCGGGAGCGCAGGTCGTAGTCTAGGACTCTGCTGGCATGCTACTCTTTTCCTACGAGTCCTGCTGCAGATGTGGCTCCACACGGATATATAGAGAAAAACCTGTGTTtgagcaccccccaccccacatcaGAAAAAGGTCCTGTGGCTCGCCCACCCCACCTCCTGTCTCGAGTGATTGGTGTCATTCCGCCTCCCGTGTCGCTGtgaatggtgtttttttttttgtttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72982 True 1936 lncRNA 0.47 2 43873781 43875739

Neighbor

gene id symbol gene type direction distance location
AMCG00009657 NA coding downstream 142250 43727206 ~ 43731531 (-)
AMCG00009652 NA coding downstream 229115 43605673 ~ 43644666 (-)
AMCG00009650 NA coding downstream 351644 43512445 ~ 43522137 (-)
AMCG00009651 porcn,LOC106567241 coding downstream 417894 43444573 ~ 43455887 (-)
AMCG00009649 NA coding downstream 434560 43434412 ~ 43439221 (-)
AMCG00009665 NA coding upstream 16711 43892450 ~ 43895658 (-)
AMCG00009663 NA coding upstream 26556 43902295 ~ 43918770 (-)
AMCG00009666 LOC105890655,LOC108438067,LOC106566835,LOC106572042,LOC105026930,LOC107558917 coding upstream 48682 43924421 ~ 43930718 (-)
AMCG00009664 NA coding upstream 57488 43933227 ~ 43935758 (-)
AMCG00009671 NA coding upstream 120973 43996712 ~ 44006803 (-)
G58374 NA non-coding downstream 2664 43870354 ~ 43871117 (-)
G58336 NA non-coding downstream 305119 43531435 ~ 43568662 (-)
G58277 NA non-coding downstream 397693 43475833 ~ 43476088 (-)
G58246 NA non-coding downstream 485863 43387183 ~ 43387918 (-)
G58149 NA non-coding downstream 863668 43006601 ~ 43010113 (-)
G58391 NA non-coding upstream 63182 43938921 ~ 43947522 (-)
G58394 NA non-coding upstream 96525 43972264 ~ 43972630 (-)
G58395 NA non-coding upstream 101546 43977285 ~ 43977486 (-)
G58452 NA non-coding upstream 221537 44097276 ~ 44104710 (-)
G58456 NA non-coding upstream 233597 44109336 ~ 44109715 (-)
G58025 NA other downstream 1200074 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 1817653 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2046847 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 3716310 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 5036187 38827965 ~ 38837594 (-)
AMCG00009672 NA other upstream 113772 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 626048 44501787 ~ 44512249 (-)
G58584 NA other upstream 666155 44541894 ~ 44542809 (-)
G58589 NA other upstream 690330 44566069 ~ 44566834 (-)
G58653 NA other upstream 907179 44782918 ~ 44785134 (-)

Expression


Co-expression Network