G58391


Basic Information

Item Value
gene id G58391
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43938921 ~ 43947522 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU72997
TTACAATTGCACACCACAAGGGAACTCACTGGAGACTTTCACTTCCACCGCTGCTCTGTGATACTGCAAGCCGGAATCCACAAAGCAGATGTACCGTCCTTCATCCCTCAATCGAAACTCCCGGATCACCAGAGACACGTTGCCCTTCTCCAGTCCTGCTCTGCTCAGTGCCAGCCGGCCTACAAAATCCTGGCCCTGAGTTTCCTGCTGATGTCTGTACAGAAGCACAGGATGTGTGTGCCCATCTCGGCTCCAGCGCACCTCCATGGCCACAGCGCTGACCTCAGGGGAGATGTGACAGGGCACCGTGAGGTCATCTCCCAGCCGAGCCACCAGGGGAGCGACGGGAACTGACACTGTGAAAGATTCTGGAGGGAGGAGAGACGTCAGACAGGAAGTGGAATTTACCATCCACTGGTGACTACTCATAGTACAGATCCTCTCAGATATAATGAAGGAGTGCACCCCTTATATGAAACTTGCATACAAAAGAACAatggtttaatgtttaaattccaccgttcattaattaaaataaagcttcaTGCTTTAACATATAGAAACTTACTTCGCCAGGAAACCCCTGATACAAGCAGCTTCACAAGTTTCCTGTACTATATTGTGGCAGCACACTTGCAGTTCCCAAAGAGCATGTGTTGGGAAGAGTGCATTCTGGTGGCGGGAGATGTTAAACCTGTCTTGGTATTTTGTATGTGCTGCTCTAGGTTATTTTATAAGGTTATTTGATAAGGAGTTTACAAAGTTATTTGATGATGTGCTCATAAGATGAATACTCCAACAAGTAGTTCTCTGTATGtatgaatacttatgcaacACTATATACCTGGGTCTTCTTGACTAGTGGTTTAGCTGGGGAGGAGTTGGACACATCCTCAGCTACTAAAGGGTCTGTATGTTGGTAACAGAGGAGGTGGGAGGTCTGACTTATAAGACCATGTATGAGATTAATCCTTATAGTGaatattgtgctttttaattgattgtttgtttgttatcttTATAAACAGCAATAGTTTTAATGTGGATAAAGAAGACAGAGCAAAGAAGgttttacaaaaggaaaaataaatcaacatgatCCCAGTCACAGTTCTCAGAGTATACCAATAAGCCTACACCTCATGAAGAGTCATAGAGCTTTAGGAGGACTATGATCTTGATTAGTCTTGTTTAAAGAAGAGAGAAGGTGACTGCTCTACAGAGCTGGTTTAAAACTTCTCTCCAGGTTTTTCCACGTACCTGCCATCACCACCCACAGCTGCATCAGAGCCACAAGCACAGTGCAGTCCTGCTCCCGGCTGCACGGCATCCCTTCTGTTGCCTTCTATCAATTGTATCAATTGCAAAGAATCACTTCTGGAGTCTTTCAGACAGGAAAGAACTATCAGTGTTctttacaattatgtatttaagtgCCCTGTTTGTTTCTATACAGATTttcctattttaaaaaaatgtgatattttccTTCCTCATGGTAGATTTCGATGTTTTCTTCAGTTGTGCTTCAGTCCATTTCTATATACCATGAAAAATGAAGTCCCACATGTGCctgtattgcattattttctatttgttttaaatgctctcCTCAGTGTACACTAATTTACTTTGCATAGGAAACCCTCATCGGTGAGGTACAGTACAGGTCTTGGAAATAATGGCAAAGATGCAGATAAATACTTTAGTTTATGAGCAGCTTTTATCACTTTCTTTCTAACAATAAATCCACAGAAGCATACATCAGTCCTTTAAAATCACAGACACAAGGCAGTGGTTTCAGCATCAGGTCATCAACAATCCTTGCCCAAACAGATGCCAATGCACCAGcgattgaagaaaataaataccattataagtttaatttaaaaaataataagatttgTAAAATCATATCTCCATAGGAATACAAGAGGATGGGTTCCAATGCAAGCcagtgagagagaaataatgAACTAGTGTAGGAAACGAAAAAGTTTTTAGTAATTATCCTTATATATAATTcgtgtaataaataaattaattcattataagCAAATGTTGTCAGATCATTTGCCACTTGCGAAATGGCGAGAGGTATGCAGAGAGTGGCTAAAGCTATTCTTGGAGAGGGTCGGTGCCACACAGCCCTCAGTGCCACACAATCCCAAAGTGTCAGAGACTCCGTAAGTCTAGACTCAAAACACCTTTTCAAAATGGCCTTTCATTAAGGTTTTCGCTTCTGTTATGTATGCACATTAAATATCTGTACACAAAGGGTCTCTGTGATGTGATCAAGGTAGAAGTTTAAAAGTTACAAACCGTTTATAACACGTGTAAAGATAAATTACACAGTTTACAGATAGTAAAAGTATGATAACAGTCAAATAATGACTCACCGTTGTTGAAGAATGTTGATTTCAATATGAAATAGTACTATTTATAGTAGCCTacactaataatgataataatgtcaATTTACAAGAGCACTATACGTGCATGCTTTTTCGAGATTATTTGCTGTATTTGAGTTAATCCAATGTGACTGCTACCcgaaagtaaaaataaaaaaattaaaaaatcactacacaatacacataaaacacacaatcaacGAGATCAGCGCCAGTTTCAGTCGCAAATTTCAACGCGTTCAAACCGACACACCTACATGTACAGAGGACGTGCTGTTCTCTCTCGAG

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72997 True 2702 lncRNA 0.40 2 43938921 43947522

Neighbor

gene id symbol gene type direction distance location
AMCG00009664 NA coding downstream 3163 43933227 ~ 43935758 (-)
AMCG00009666 LOC105890655,LOC108438067,LOC106566835,LOC106572042,LOC105026930,LOC107558917 coding downstream 8203 43924421 ~ 43930718 (-)
AMCG00009663 NA coding downstream 20151 43902295 ~ 43918770 (-)
AMCG00009665 NA coding downstream 43263 43892450 ~ 43895658 (-)
AMCG00009657 NA coding downstream 207390 43727206 ~ 43731531 (-)
AMCG00009671 NA coding upstream 49190 43996712 ~ 44006803 (-)
AMCG00009677 NA coding upstream 103888 44051410 ~ 44064467 (-)
AMCG00009678 NA coding upstream 126328 44073850 ~ 44074116 (-)
AMCG00009683 NA coding upstream 308893 44256415 ~ 44264122 (-)
AMCG00009690 gdi1,LOC105013583,LOC106567106,LOC106572620 coding upstream 337356 44284878 ~ 44293118 (-)
G58377 NA non-coding downstream 63182 43873781 ~ 43875739 (-)
G58374 NA non-coding downstream 67804 43870354 ~ 43871117 (-)
G58336 NA non-coding downstream 370259 43531435 ~ 43568662 (-)
G58277 NA non-coding downstream 462833 43475833 ~ 43476088 (-)
G58246 NA non-coding downstream 551003 43387183 ~ 43387918 (-)
G58394 NA non-coding upstream 24742 43972264 ~ 43972630 (-)
G58395 NA non-coding upstream 29763 43977285 ~ 43977486 (-)
G58452 NA non-coding upstream 149754 44097276 ~ 44104710 (-)
G58456 NA non-coding upstream 161814 44109336 ~ 44109715 (-)
G58457 NA non-coding upstream 162447 44109969 ~ 44110283 (-)
G58025 NA other downstream 1265214 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 1882793 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2111987 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 3781450 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 5101327 38827965 ~ 38837594 (-)
AMCG00009672 NA other upstream 41989 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 554265 44501787 ~ 44512249 (-)
G58584 NA other upstream 594372 44541894 ~ 44542809 (-)
G58589 NA other upstream 618547 44566069 ~ 44566834 (-)
G58653 NA other upstream 835396 44782918 ~ 44785134 (-)

Expression


Co-expression Network