G58459


Basic Information

Item Value
gene id G58459
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44115650 ~ 44121067 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73073
TGACGACGTCACTCTCTGGGGACAGGAGCCAGCGGTTCATCAGGATGTAGTCGTAGCGGCACGAGTAGTTCTTGGCGGGTGGGACGAAGAAGGTGGCTGAGCCGTTGTGTGTGATCACTGTCTGGGTCCAGCTGTTCTCCACCTTCAGCTGGAAGGAAGCGACCCCGAGCTGCGACTCAGTGGAGCAGGTGACGGCAAACCTGTGCTCTCTTTTCACCTCATCTGTAACTACGCTGATGGAGATGCTGGGCTTCTGGAGGATGgctgtggggggaaaaaaatgaaaacatctaggcaggtctctctctccagtaGAGATGTACCGAATGTTCGGCAACCAAAATTATTCGGCCGAAAATAGCAAAAAAAGCACTTTCGGTGTTCAGCCGAATAAGTGAACAGACCGAATAAATTTTACCcaacaattatgtttttgatgACGCGATCAAATAGCAACCAgctattgctgtttatttaatattcgcTGTAACTCGAACGCACAGTTGTGTTTCCGATCGGAGAGCGGCAgtttgagtgtggtttggacaGGAAAAGCCAATCAtttagtcaagtagattgtataaattagctagataaataggtcttatacattttgcatttcgctgttgtgaccggaaaacattgccacaaggacgctactGTAATGTAACGAAACCTGTCCTAGTAAGGTTGTGTTCTAACTGGATTTGACAGAGTAGCGTGTAGCTGCCACCACCTTTGGTTTACCGAGACGGTCCGGTCGAATAACCCTGGAAGCTAAAGGTAGTTATGTGAAGGGAGAGTGAAATGCCAAGAGGAAATATATAACAAAGTCTTTTTAATAACCAATTACATAAGCTGGGTACACAATGTACAATTTAGGCAAATAGAATAACAATCACAGTATCACTAAACAATCCATAAAAAGTCAATATCCATTAAATAGTTTCTCCCTCAAATCAGTCCTCATACATACAGCCAATTGTTAtactaaaacagcaattaaccttcataaaaaaataaaaaaataaaccatacaataaACACCAATGTAAGTGAAAAGAAACCACAATATAAAAGTCAGATAAAccatacaataaacaaaccaatataaGTTACCACAATTCCAACAATAATTTCAACTATAAAAAACCAATACAAACTCTTCAATGTAAAGTCAAAATtcacaacaaaccaaaaacatgttaattgcGGTCTTAGATCAATTCATTGGAACATAGCCAATAGGATCCAGCAcaatccaatcaatcaatcacttgGCCCTGTTACACAGATTGATTAATAGCAGTATGTTTAAGTCTAATCCACAAGTTAATACATTAGTTAAAGAAACTTATTATGGGCAAGGACTAGTATAAAACCAAgttaaaacaatgaaagcatTTGATCAATTACACATCTCCCGTGTGTCTTCTGAGCACTGCTTATATCCCCATCTGCTCCCGATATGACATCCTGTGATTGGTCGCAATGCTCAAGTCCAATTAGGGTTAATAAGAGCCAATTAAATCAGTGACAGAGCCGAGTGGCTCATCACAGTAAGGCATTTTCGTTGCAGCTCaaagtgaatgaaaatgtataaaaaatttaaaagaaaaacatattggtcggtcaattacagctgtaattgcaaaatattcctttataaaacaaacagtcaCAACCTTTAcgtatagttaatttgaaattgagacaataaaaagttgtgataatgtcgggacaataatacaagagtctgtTCTGATGAAGTGAGGTccgaggggtgggggggtgctgatggattgaggtccaggggggccggggggggtGAAGTCAGGTCCGGGGAGGGGACTGGGTTGGGGGTACTGGTGAAGTGAGGGGAATGAGGGGAATttacaatgaggaaaataagCCCCCCTTTCTTAGTTTTGCCCTGTTTCATATCATTTTCCCCCCATGGCTTCAATTTCTCCCCATAAATGGGGGTTTCCCCCCAATCTGGTAACcctggtttgtttacattgtgtctttgctggcgtgcattgtattgaccaatggaaagtctgtcatcattcctagagattatatatattttacccaACCACCGACCATGACTCTATGAATATGtagccaatccaatgaaatccttttaatgacaTGCAGAAACCCAcagaagggagtagcactgaagaggaagaggagtatgaagagcaataatgtgtcaccatataaaaCCCCTTCTCATTTGTTAGTGTGTctatacagatccccattagctgccatgttatttcgtatgtgattgattcatttgaaaatgatgctctactagcaagtgttataattcaaaaGAATGCAATGTTctgatcaaagaccttataacacttgcaagtagaaactgtgtgggggcatgtttttctatccagatccttttccctcattcACACCTATCTAGTCTGTACCGGTGTGCAATTATCTTttgttatagtgattgattCATTACCTGAATAATTGccacgttttaacatgttcaccacacattttgCATCCTCAGTCAGTTATAGGCCTAATATAGGCTATTCAAGAAATGGGGGGGCTCAAAGatggccaaataaaaatatttttattttactaatttatttattttaagttatattgtgctttgttgGTATAATGTTTGTTGGAATGTTACAAAAATGttcagtgttaaataaatatttttaaattgtagttttgtaattgattttgtctttgaaaagcaagacaaaatagtaaaaagcacatttagactatttaatttatgcaatggtgaaaaaattggcaaaataaatggaaaaaaatgcgAAAAACCACGTTCGCTATTCGGCCTTCGGCcaagtgtttcattatattcGGTTTCGGCTTCGGCCAagaattttcatttcagtgcatCCCTACTCTCCAGTGAACCATGGTGCCATGACTGAAAACGCTGACAATCTTAGAGGTGTGTTACATAGTGTGATGGCCAAGGGGCTGTGGGGCTGTAACAAGACCGGGCTTCTGCTATCAGGAAAGGGGACTGACACATCGGGGGAAGAAAAGGTCAAGGCCATTGGTTTCCAGTCCTGGTCCCCAGGACACTGTTGGATTTCAGGGAGAGTCATGGCTTCTTCCTGTTGCTTTCTGTTACAACCGGGCTCCTCGGTACTACCCTGAACTCAAAATCTGACATACATTGGACAAGCAAGAAAgcatgtaatgtatttgttaatataaatgACTAATCTGATGGGAAAAACCCAGACCGTCTGTGTCGAAACAGGCCTTCAATATCCAGTCCTAAGTGTCCCCTTTTCATAACGTTACACTTACAATACaatctaatacaatacaatacagatgtGTATATTGCCTTTAATCAGAATTCGACTGAAAGTACTTTACTTTACTTCAGATCAGACATCAAATGCCAGGCTGAACAAGGAGGCTGAGGCTTGATTACATACATAGACCCTCGGATACATTTAGGGAGAGAAATCCAGACAAAGAGGACCCTGACAGCTAAATGTTCTCAGTCTTACACAGAACTTTGTCAGAGTTTGGGACAAGCTATCCAGACAGCTCATGGAAGAAATCAGATACACCAGGATCCTCCAGGAAACAGCGTGATTAATTCCTTGGATCAAGTCATAATTGGTTATTGGCATCCAAATTAACTAGATAGGGGAATAGGCTTCCtcttatttaaaaagctttcatatttttcaataaataacaataaaaaaaaaacacttaaatgaatgaataaatacacacacttaCCTGCACACAGAACTCCAGCATCTTCCATGTGACTGCAGTCATGTTTCCCTATCTTCTGGTGTGCACATTGTGTCAGGGTGGATTCGGTGCCCTGACACCGTACCCCATCCAGCCAGATTCTCCCTTTGCCCTTTCCAAACTGGGCCTGGCCCAAAGCGTCCACGGCTCTTGGGCACCCCAGCTCTCTGCACACCACCTCAGCATTGGCCAGGGTCCAGCCATCGTCACACACTGTCCCCCACTGGTCATTGTAATAAACCTCCACTCTCCCAGAGCAGCGCGATTGCCCGTTGACCAATCTGATCTGTGCACCGTctagagacagagaaacacgGCTTTCATGATCTGGGTATACcgcaagaagaagaaaacaagaagaagaatataCTTTGTTGATATGTGAGAGTCCAAAATTccaaaatagactggataggatcctcggatcacttagttattaatggacaccaaacgagcatgatggggcgaatggcctccccTCGattgtcttatgttcttatgttcttaggaAAGTGATCaaagtaatagtaatataattAGTAGTAATACTAGTAGTTGTACAATTCAGGTTAGGAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73073 True 4397 lncRNA 0.41 2 44115650 44121067

Neighbor

gene id symbol gene type direction distance location
AMCG00009678 NA coding downstream 41534 44073850 ~ 44074116 (-)
AMCG00009677 NA coding downstream 51183 44051410 ~ 44064467 (-)
AMCG00009671 NA coding downstream 108847 43996712 ~ 44006803 (-)
AMCG00009664 NA coding downstream 179892 43933227 ~ 43935758 (-)
AMCG00009666 LOC105890655,LOC108438067,LOC106566835,LOC106572042,LOC105026930,LOC107558917 coding downstream 184932 43924421 ~ 43930718 (-)
AMCG00009683 NA coding upstream 135348 44256415 ~ 44264122 (-)
AMCG00009690 gdi1,LOC105013583,LOC106567106,LOC106572620 coding upstream 163811 44284878 ~ 44293118 (-)
AMCG00009693 NA coding upstream 202918 44323985 ~ 44328354 (-)
AMCG00009692 NA coding upstream 217996 44339063 ~ 44342291 (-)
AMCG00009691 NA coding upstream 225403 44346470 ~ 44354753 (-)
G58457 NA non-coding downstream 5367 44109969 ~ 44110283 (-)
G58456 NA non-coding downstream 5935 44109336 ~ 44109715 (-)
G58452 NA non-coding downstream 10940 44097276 ~ 44104710 (-)
G58395 NA non-coding downstream 138164 43977285 ~ 43977486 (-)
G58394 NA non-coding downstream 143020 43972264 ~ 43972630 (-)
G58511 NA non-coding upstream 204090 44325157 ~ 44325573 (-)
G58548 flna,LOC107699576 non-coding upstream 359985 44481052 ~ 44526239 (-)
G58585 NA non-coding upstream 421876 44542943 ~ 44543177 (-)
G58605 NA non-coding upstream 537349 44658416 ~ 44659098 (-)
G58611 NA non-coding upstream 540814 44661881 ~ 44662333 (-)
AMCG00009672 NA other downstream 119996 43989511 ~ 43995654 (-)
G58333 NA other downstream 170353 43482421 ~ 43945297 (-)
G58025 NA other downstream 1441943 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 2059522 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2288716 41814559 ~ 41826934 (-)
AMCG00009697 NA other upstream 380720 44501787 ~ 44512249 (-)
G58584 NA other upstream 420827 44541894 ~ 44542809 (-)
G58589 NA other upstream 445002 44566069 ~ 44566834 (-)
G58653 NA other upstream 661851 44782918 ~ 44785134 (-)
AMCG00009739 NA other upstream 1047874 45168941 ~ 45230457 (-)

Expression


Co-expression Network