G58511


Basic Information

Item Value
gene id G58511
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44325157 ~ 44325573 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73143
NNNTGTCTTAAAGTGTCCTCAGCACATTCCCTCTTCACTTATAACATTTTCTATAACTCCAGTGTTACTAGACACAGGCTCTgtgttttatctgtttatttaaccCCCCACCTCCGAGAAGAGACGGAGAGTGATGTCGCAGTGAACGGAGGATGATCACTGACCTCTCAATCAGCCCCAGATCACAGCTCCTCTCAGAGGGCCGTTCAGTACAGAATACCGCCTGCAGAGACTCTGCCAGCTATGTGtccttgtattattatttaaggcTGCACAACtcatttagtttttctatttaaaagaTAGTACTATACTGTACACCTCAAACTGCACTTTGATTGCTTATAAATGCAACTTTGAATTTTGTCATGttactgaaatataaaatgttatataactgtataaataaatgccatG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU73143 True 417 lncRNA 0.39 1 44325157 44325573

Neighbor

gene id symbol gene type direction distance location
AMCG00009690 gdi1,LOC105013583,LOC106567106,LOC106572620 coding downstream 32039 44284878 ~ 44293118 (-)
AMCG00009683 NA coding downstream 61035 44256415 ~ 44264122 (-)
AMCG00009678 NA coding downstream 251041 44073850 ~ 44074116 (-)
AMCG00009677 NA coding downstream 260690 44051410 ~ 44064467 (-)
AMCG00009671 NA coding downstream 318354 43996712 ~ 44006803 (-)
AMCG00009692 NA coding upstream 13490 44339063 ~ 44342291 (-)
AMCG00009691 NA coding upstream 20897 44346470 ~ 44354753 (-)
AMCG00009704 plxna3,LOC107743094,LOC107601745 coding upstream 328278 44653851 ~ 44654614 (-)
AMCG00009705 NA coding upstream 330471 44656044 ~ 44657724 (-)
AMCG00009710 NA coding upstream 357091 44682664 ~ 44693533 (-)
G58459 NA non-coding downstream 204090 44115650 ~ 44121067 (-)
G58457 NA non-coding downstream 214874 44109969 ~ 44110283 (-)
G58456 NA non-coding downstream 215442 44109336 ~ 44109715 (-)
G58452 NA non-coding downstream 220447 44097276 ~ 44104710 (-)
G58395 NA non-coding downstream 347671 43977285 ~ 43977486 (-)
G58548 flna,LOC107699576 non-coding upstream 155479 44481052 ~ 44526239 (-)
G58585 NA non-coding upstream 217370 44542943 ~ 44543177 (-)
G58605 NA non-coding upstream 332843 44658416 ~ 44659098 (-)
G58611 NA non-coding upstream 336308 44661881 ~ 44662333 (-)
G58612 NA non-coding upstream 339165 44664738 ~ 44664945 (-)
AMCG00009672 NA other downstream 329503 43989511 ~ 43995654 (-)
G58333 NA other downstream 379860 43482421 ~ 43945297 (-)
G58025 NA other downstream 1651450 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 2269029 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2498223 41814559 ~ 41826934 (-)
AMCG00009697 NA other upstream 176214 44501787 ~ 44512249 (-)
G58584 NA other upstream 216321 44541894 ~ 44542809 (-)
G58589 NA other upstream 240496 44566069 ~ 44566834 (-)
G58653 NA other upstream 457345 44782918 ~ 44785134 (-)
AMCG00009739 NA other upstream 843368 45168941 ~ 45230457 (-)

Expression


Co-expression Network