G58522


Basic Information

Item Value
gene id G58522
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44386497 ~ 44407568 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73158
CTGTAAGGGCCACACCCCAGTAACAGACCTGCACAGCGTTTCCACAGCATCAGCCCCTCCAGGCCGCCGCCAAACCTCCACTGGAATCGACCCTTTACAGGCCAGACGGCAGGATTAGGATTGACCCCCCAGGGATGCCCAAAAATACCTAACAAGCGGATGGAAAGTTTTAGATTAATATATCTTCAGATCTCGCAGTGCCAACTGAGGGGGAAATGAGATGAAAGAAAGGCAGGAGTCTGGGGATTGAGtttcactgttttatttgtctgcGAACACACTCTCGCACTccgtggtggtgggggggccgTGTCTACTGAGTGTGCAGGGCACGCCAGTGGTCCAGGGGCCCGCGGCTGGGGATGTACTTCACCCCACAGCCGTCCGGGATCAGCCTCTTCTCCGCGATCATGTCGTCGAAGTCGCAGGTGTTGAACTTGGTGAAGCCGTACTTCTTCGAGATGTGGATCTGACCTTCTGGCGTCCGGGGAACTTGAACTTGGCGCGGCGCAGAGCCTCGATGATGTGCTCCTTGTTACTGGCCTTGGTGCGGACGGACATGATGACCTGGCCAATGTGGACTCGGGCCACCGTCCCCTGGGGCTTCCCGAAGGCGCCTCTCATCCCAGTCTGGAGCCTGAGACacggaggagaggagagagggattaCAGCACCCGTTACGGCCCAGCACTGAGATACTCCAGAGCCACTGGAAACACTTCACACAAGAACCTTGACCCACTGTCTGAGGAAGGATTCAGGAAAGATCAGCAGTAAGAACTCTTCCCCATGAAAACCTTCTCGTACGTGGGAGTTCAGGAGGCAGTGTGGACGGTTGTGACTTGTCTCAGAGGTCCCTTAGAGCACCCAGCACTGACCAGCTGGGCACGTACACTACCAGAGAGGGTCACTGTCCGCAGCCATCGCACACCAGCGCCGTATAGCACACGGCCTGGTCGGCTTAATAAGCTGCGTTGCGTCCGAAACAGGACGCCGGGCTGGGCTCCGGACAGAGGGGCGTGCGGTGAGGGAGGGACACTGACCTGTCAGCCCCAGCGCAGGACAACATCTTGTTGATGCGGATGACGTGGAAGGGGTGCAGGCGGACGCGGATGTGGAAGCCGTCCTTGCCACAGGTCTTCACCATGTACTTGTTGGCACAGATACGAGCGGCCTCCAGCGCCTTCAGAGGACAGCTGCTCATATTCATCAGAAACCATGTGACCACACAGGGGGAACTCATCAACCTTAGCCTTCTTCCTGCCCAGGTCAAAGATGCGAATCTTGGGGTCTAaaacacaggagagagagagacagttggAATCTTCTCACCACACGGAGGTCTAAAAGACTCACTATGGACATCTGTTGGGCTAAATATTTGCTAGCTTTACATTACAGCTTTTTTGCTTTAATATACTTATGAGCACGTTATTTTGTGATGGACCAACTACACCATAGACTCGTCTTATTCACAGTTTGCCATTATAATGACCGAACATCTGAGAAGTGTCTCTAGGGTCCCTTAGAGCGCCCAGCACTGCGCAGCTGGGCACATACACATCCCGAGAGTGTCACTGTCCGCAGTCATTGCACACCAGCGCTGCACGGCACGCAGTCTGGTCGGCTTAATAAGCTGCGTTCACTAGAGTTAAAGAGCACACGAGGTCAGAAGACGGGAATCTCATACAGTCAAGAGATCTCAGAAGCCAGTCAGACCCAACTGCTAAGATACTCCAGTCATTCAAGGTTATAGTTTTACACACACTTCTGAACTGGGATTCttctatccatctatctttaTGCAAGTACTGCACAGAAGTATTCATAGTTTAGTGTCTCCTGGAAGGGATCTATACAATGACACTGAGGGGAGCATGGTTTAactgtggggagagagaaatTCACCTGGTGAGAAGGAATCCTCTCCACTCATATCCTCCCATATTGCCCATCTATCAATAACTGAGTAACTGTAGATTTAAGACTATATGGGTGTTTGTTGAATTTTCAGCCTGCATATTCAGCAGAAAGTGGATGTACTTACCAGGCACACCCCTGCAGAAACGCGACTTGGGGTAAGGCTTGTTCTTACAGTATCTGTAGCTGAGAAATTAGAACATTTGACATTACATCAAGTGCATAATTAAGCAGCCATTCAATTATTCCACAAAATTAGTTACTTTCAAGAGTTTCCCGTGATGTATTCAAGCCCAATCTTccataattatacatatacttTTAGTCAACCAATGAGGGATCCACATACTAAGGACATTAACCAATAAACATTACCTTCAAAAAAAGGTGCCAATCAGCGATAGGTAATAAATGAGAGTAGgaattacacttaaaaaaacaccatccgtttagtttagtttcctCATGCATCCCACTATTTCAcagattcattcattcatccataCAGGTAGTCTTAACAGTATTAGtacaatataaattaagttTTCTGCCCTTGACACGTTTCTGATGTTAACGTGGTGCGGCGGCGTCCATTAATGACACCAAGGCAGGAGTGTGGCCTGCAAACTGTCACTTAACAAGTTGAGCACTTCTAGAGAAACACGGCCATTTCAGCTGAACTGGCAGCCTCGGCTCACTCGAGAGGCCGCGTTGAAGACACACATCTACGGAAGCGCTGCCGAAAGCTGCCACATCCTCAGCTCCCCAAGCGAATGGCCCTTTCCCGGGTTTAAGACACGGGTGTACTTAATCAACACATTTAATCACTGAATTAACACATCCTGTAGCGCCGGGAGGAGGACAGGCCGGCTGGGCGCACAGACCGCGGTCCCGCACATGGCCGCTCGGAGCACCGGCTGCCATTTTTTACCACCCAAACCCAACCCGAGCAGCAGTTTGTCTTCCACTCACCAACGGGCAGGTCGGCGCCCCATGACTGCGATCTGCAATGCAACACAGAGAGGAGactttattaataacaataagtgCGTCCCGGAGCGAAGTTACGCGGGTTTAATCGGTGATTGCGCCGTTTTCGAGAGAGAGCCGCCGCCGGCGCGCTGTCTCCAC
>TU73159
CTGTAAGGGCCACACCCCAGTAACAGACCTGCACAGCGTTTCCACAGCATCAGCCCCTCCAGGCCGCCGCCAAACCTCCACTGGAATCGACCCTTTACAGGCCAGACGGCAGGATTAGGATTGACCCCCCAGGGATGCCCAAAAATACCTAACAAGCGGATGGAAAGTTTTAGATTAATATATCTTCAGATCTCGCAGTGCCAACTGAGGGGGAAATGAGATGAAAGAAAGGCAGGAGTCTGGGGATTGAGtttcactgttttatttgtctgcGAACACACTCTCGCACTccgtggtggtgggggggccgTGTCTACTGAGTGTGCAGGGCACGCCAGTGGTCCAGGGGCCCGCGGCTGGGGATGTACTTCACCCCACAGCCGTCCGGGATCAGCCTCTTCTCCGCGATCATGTCGTCGAAGTCGCAGGTGTTGAACTTGGTGAAGCCAGTGGTGGGGG
>TU73161
CTGTAAGGGCCACACCCCAGTAACAGACCTGCACAGCGTTTCCACAGCATCAGCCCCTCCAGGCCGCCGCCAAACCTCCACTGGAATCGACCCTTTACAGGCCAGACGGCAGGATTAGGATTGACCCCCCAGGGATGCCCAAAAATACCTAACAAGCGGATGGAAAGTTTTAGATTAATATATCTTCAGATCTCGCAGTGCCAACTGAGGGGGAAATGAGATGAAAGAAAGGCAGGAGTCTGGGGATTGAGtttcactgttttatttgtctgcGAACACACTCTCGCACTccgtggtggtgggggggccgTGTCTACTGAGTGTGCAGGGCACGCCAGTGGTCCAGGGGCCCGCGGCTGGGGATGTACTTCACCCCACAGCCGTCCGGGATCAGCCTCTTCTCCGCGATCATGTCGTCGAAGTCGCAGGTGTTGAACTTGGTGAAGCCGTACTTCTTCGAGATGTGGATCCTTCTGGCGTCCGGGGAACTTGAACTTGGCGCGGCGCAGAGCCTCGATGATGTGCTCCTTGTTACTGGCCTTGGTGCGGACGGACATGATGACCTGGCCAATGTGGACTCGGGCCACCGTCCCCTGGGGCTTCCCGAAGGCGCCTCTCATCCCAGTCTGGAGCCTGAGCCCCAGCGCAGGACAACATCTTGTTGATGCGGATGACGTGGAAGGGGTGCAGGCGGACGCGGATGTGGAAGCCGTCCTTGCCACAGGTCTTCACCATGTACTTGTTGGCACAGATACGAGCGGCCTCCAGCGCTGGGGGGAGGAAGAAAGGAAGGACAGTTTATGAAACAGCCGTCTCAGACACTTACTACACTGAGCCAGCCACATTCACTTTTAAGCAACTATTAAACAACGTCCTGA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU73158 True 3051 lncRNA 0.51 3 44386497 44390082
TU73159 False 459 lncRNA 0.56 2 44386497 44407568
TU73161 False 878 TUCP 0.57 3 44386497 44387964

Neighbor

gene id symbol gene type direction distance location
AMCG00009689 NA coding upstream 325 44382557 ~ 44386172 (+)
AMCG00009688 NA coding upstream 5461 44373701 ~ 44381036 (+)
AMCG00009685 NA coding upstream 14082 44364531 ~ 44372415 (+)
AMCG00009686 taz coding upstream 63700 44314972 ~ 44322797 (+)
AMCG00009687 NA coding upstream 72348 44303226 ~ 44314149 (+)
AMCG00009698 NA coding downstream 32006 44439574 ~ 44442056 (+)
AMCG00009696 flna,LOC108436314,LOC107712729,LOC101154674,LOC107570276 coding downstream 42535 44450103 ~ 44482061 (+)
AMCG00009695 NA coding downstream 76399 44483967 ~ 44490079 (+)
AMCG00009699 NA coding downstream 85127 44492695 ~ 44502439 (+)
AMCG00009703 plxna3 coding downstream 234382 44641950 ~ 44642771 (+)
G58513 NA non-coding upstream 26435 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 60924 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 216708 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 459866 43921474 ~ 43926631 (+)
G58317 NA non-coding upstream 470737 43909588 ~ 43915760 (+)
G58527 NA non-coding downstream 5704 44413272 ~ 44483247 (+)
G58666 NA non-coding downstream 485277 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 510475 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 514516 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 735607 45143175 ~ 45143472 (+)
G58324 NA other upstream 450735 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 942077 43436990 ~ 43444420 (+)
G57830 NA other upstream 2308256 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2787373 41596229 ~ 41599124 (+)
G57604 NA other upstream 3391838 40990802 ~ 40994659 (+)
AMCG00009694 LOC103385381 other downstream 154209 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 176994 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 225182 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 342608 44750176 ~ 44760058 (+)
G58747 NA other downstream 648497 45056065 ~ 45057874 (+)

Expression


Co-expression Network