G58527


Basic Information

Item Value
gene id G58527
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44413272 ~ 44483247 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73169
CAAATAGTCAGTTATTGCTGATTCCGTGCAGGCTTTATTTGAGACTGAACCGATTACACATAGTGCCTACAGCTACACAATACACTGATATTCATTGCTCTGAATGGCTGGTTAACAATTGCTAGTTGCTggttaatgaatgaatgcaaaaGCCAGACATTTTAATCCTTTTACTGCATAATACTGGCAGCgctctgaaaaacatttaaagagccccccacccccttgaaGAAATGATGTCCCATAGCCCATTTAAAGCTTGCAGGATCTTTTGAGAAAGGTCAGACGAGCCTTCGTAATCGAATAGCTAGAATACAGCCCTCACGCCCCAGATGTTGCCAGTGAGAAATCTTGTAAGAATTCTTGGCTTGTGGATTCCTGatggatttctctctctctctctctctctctctctctctctctctctctctttggtcatGCAATGCAACTGAAGGTCATCGAGTCACTTTGATTTTTCTCTTCGCCCCCCTAACCCCTCCCTGTCCCccccttttgtatttttacgTCCAGAATGACTGTGtgaattaataaaagaaaactgtcaACTGTCCGTACCAGAGGAAAAAGCCTTTAAACAATGTTAGACTGTTACAGTATTTTGATACACAATAAAGTTGTCttatttttactgttgtcaattaaacttgaaaatgtcgtctgttttgtttctccctGTGATGTTTTCTGAAGACCTTCATTTTTGTGGTTGAGCTCTGATCCAAGGATCGTATTCTGAAAGATTTCAGTGCGTGCCGTTGTCAGCCAATTGCGGTGCTTGGATTTTGAGCAGTTGACCAATGGGAGGCTGGATTGTGGTGACCTTCTCCTTGAATGTGTAAACTTCTACAGCCACCTTTTACACAAATATGTGAACAAATGCTTTAGGGGGACTTAAGTGGTCAAATTGGGTAATTTATCCCCCTTTAAACCCTATATTTGAATAGATTTTCCTGATTATTGGGTAACTGGTCATTCCAAGAAGCTTACAACTCTTAAAgtgataatttaaaaaatgtgagaTCTGATCAGCCTAAATCGGAATTTCTCTACTGCCCCCCATGGGGGGGAAAATTATCTTAATTCCCCTCCTAGTTCACTGGTtcaattttgtttatatttttttcagttttacagttCATTCTGCCCCATCAAAAGTGGTCACAACCCTCGCCAGAAATCCAATCTCTAGCTGCTCAATCCTCAGTCTGGTCCCGCTTTTCACTGTGGAGCACAagcaatgtcatttttcagaGTACCTCACTTTGTCGCAGACTGATGTCCCTGAAATCACTACTGCCTGTCAGCAATGACCTCCTTGTTCTATCCGTTCTGAAGAAAACCGAAACCAAAAAATCTTCcaataaagtttaaaatatatatatatgtcggCTGTACTTGAGTACTGTTGAACTTCTATGATGGTCTTAAGTGTTTGAAAGGAGgactagtttatttttttggttttctttgacTTTCCTAGTTAGACTTATCCATTCTCATTTTATTGATTCCTAACTTGCACATCTGCCAATCTAGCCTTCCAAAATATCGATTGAATTGTGTTCTTTAATAAATTGTATGCTTTACTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73169 True 1613 lncRNA 0.39 2 44413272 44483247

Neighbor

gene id symbol gene type direction distance location
AMCG00009689 NA coding upstream 27100 44382557 ~ 44386172 (+)
AMCG00009688 NA coding upstream 32236 44373701 ~ 44381036 (+)
AMCG00009685 NA coding upstream 40857 44364531 ~ 44372415 (+)
AMCG00009686 taz coding upstream 90475 44314972 ~ 44322797 (+)
AMCG00009687 NA coding upstream 99123 44303226 ~ 44314149 (+)
AMCG00009695 NA coding downstream 720 44483967 ~ 44490079 (+)
AMCG00009699 NA coding downstream 9448 44492695 ~ 44502439 (+)
AMCG00009703 plxna3 coding downstream 158703 44641950 ~ 44642771 (+)
AMCG00009702 NA coding downstream 164769 44648016 ~ 44653748 (+)
AMCG00009701 plxna3,LOC106572068 coding downstream 177567 44660814 ~ 44666978 (+)
G58513 NA non-coding upstream 53210 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 87699 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 243483 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 486641 43921474 ~ 43926631 (+)
G58317 NA non-coding upstream 497512 43909588 ~ 43915760 (+)
G58666 NA non-coding downstream 409598 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 434796 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 438837 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 659928 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 711276 45194523 ~ 45198264 (+)
G58522 NA other upstream 5704 44386497 ~ 44407568 (+)
G58324 NA other upstream 477510 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 968852 43436990 ~ 43444420 (+)
G57830 NA other upstream 2335031 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2814148 41596229 ~ 41599124 (+)
AMCG00009694 LOC103385381 other downstream 78530 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 101315 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 149503 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 266929 44750176 ~ 44760058 (+)
G58747 NA other downstream 572818 45056065 ~ 45057874 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G16446 NA non-coding CI01000001 null 5924884 ~ 5939544 (-)
rainbow trout (Oncorhynchus mykiss) G15706 rab3a non-coding NC_048565.1 CM023219.2 16952307 ~ 16952527 (+)
eurasian perch (Perca fluviatilis) G13855 NA non-coding NC_053113.1 CM020910.1 2514174 ~ 2578148 (-)