G58548 (flna,LOC107699576)


Basic Information

Item Value
gene id G58548
gene name flna,LOC107699576
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44481052 ~ 44526239 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73196
CACAGATATGAGACCCACTGTAGAAGGCGGGTTAAAGTCCGGCGCTGGTCATGCCAGGCTCCCCAAGTGGAAAGCAGGGCAGGGACACTGGGGAGTGGGGCTGGCGGGGAACGGAGGCGAGGAGATGGGGCTCCTCTCTGCCCGGGTTACGAGGGCACTTACCAATCGTATGGACTGCCCTCAGTTGATCTTGTTGAAGGGGTTTTGCTCAGGCGTCTCCATGCTGGTGAACACGTAGTACAGGAAGCTGGCCACCAGCAGGAAGGCCAAGATCTGGAGCCACAGGGGGATGAGTCTCGACTCCTGGGAAGGCTTCTCCTGGGCGGACCTGGTTGTCTGTCCTGCGGAGGACTTTGTTGGGACCGGCCTCGAGTGCAGCCCGTCCCGGGGGGTGGCCTCTGTGGCTTTGAAGTACATCCGCGCCCTGAGACGGACAAAGGGAGGAAGAAACAATTAGTAACAGAAGTGCGGGTGTCTGGGTGGGGGCGCAGTGTGTCCAGTATCTGTTTGAGTGTTCTTCAGTGCTACTGAACCAGAAACAAAGACTAAAAGAACACAAAAGCATCACTTGTTGAAGATTAAAAAGCTCAATAAGAAACTCACGCATTTCCATACAGTTTCCTGGGGTCACTGTACGAGTCCGTGCTGCTGTACTGCCTCCCGCTGCAAGACAGAAGCCCAGCCATCACAAACCTAATCACAGACAGCGGTCTGGAACAGCCCCTCATGAGAGGAGCAACACCCATTCCAACTACAGCTGAAACTAAGTGGAACAAATCAAACATCTCAAACAACTCCTTAGAAACTATTTCCCTAGACTTTTTGTTGGGGCTATAAAACTGTCAATTTAACCAACTGTCAATTGTTAAGGTCACGCCATCATCCTTGGATCAGATTCAGGGTTGTTCTAAGTGAGAGATGACCGTCGCAACGAGATGGGGTCTTTACATTTGGAACCGCAGCGCTCACATCAAGGAGGATGGCTCACCTGTCTTCGTACTCCCTAACCGGTTCCCTGTAGGAATCGGAGGTGGTGTATTGTCTCTCGATGGAAGAGTAGTTTCTGGGAAGGAAATTCAACATTCACCATGATGCGGAAACTGTCCCGTTTGCCCGTAACCTTGGACTGACGGGGTACGCCTGGACTCCTGCGTGACATTTCAGACAGGACTGGTCTGGAGCACTGTTACACGTACTTTACACAGAATATTTAACCATACGAGCTCACGAATACtagggtttctgcacactgatTCAGAGACCATAAGACCTAAAGGAGGTCTAATTAACTTGaccaattaaggattcaatatgccttttaaattaagttaaaacttTGAAAATACCACACTTACCCATCATCTTCAAAATCATCATTTCTGATCTGAAAGACGAAAGAGGAGCGCTTTTGTGACGATATACACACAGAATTTCACTGCACACGACGCCCCCGCGAACTACAAGAGCAGCAGCACAATTAAAATGCCTGTGTTTGCATGAGAGTTCAAATGTGCCGCTGTAAGTGACAATTTTAAAGCGTGATTTACAACAGTGGTATTCCATAGAAGGGTCCTTAGTGTTTTTGTCCAGGTAGGCTTGCCGTACTAAGTCAGGCAGTCAGACGTGTTTTGAGCAATGCCTACTTccacaatactttttttttttttttttttagttagtttCCTTTTGTGTCCAAATGCATGAGATTTGTGCAGCTTCCAGCAACGCAGCGACGCACAGGACAACGGCAGAGTGTGGATACCAAGGCCGTcgcaaaataaatatagcaaGCCCACCTGGACATAAATGTGAAGGACTTCCACGTAACATCGCTGTTGAAAGTCAGGTCTTGCCCGTTTAAATCTTCAAAGCCCGACTGAACCATTTTATGGACAGATCTGTAAgaacagaacccccccccccccccccccCATACACATTAGTTCTTGATTGATTGTGGCAAAGACCAATATAGAAACAGTCACCTCACCCCCCCTATTGCCGCACTACAAACTGTCCTGTTGTGAAAATGGAGGTTATTCCCTTGTCCCTCCCCACTTTGCAGTCTATTTCTACACTACTGCCTAAGTGGATAAGaaacccaccccaccccagaACACCACATTAAACCACTTTCAATTTCAACAAAGAATCCCAGATAAAGCAATTGATTGCCTAGATCTTTGGCTCCACTGGTGGTTTGGttgtgcaaagaaaaataaaaggcagtgGCTAATTAGCATGTGCAGCAGTTAAGCAATCCATTCCACACTAGGGAGTCAAAAGCCTCCTCCGGCAGTCTGCGATAAGCAAATCACTTCTACACTAAGACAGCACCTCTGCTGTCACAAGAGAAAAGGCAAACGCACTCATTCTACCAGGACAAGATTAGCAGCCACTATGGCCCTGGACACACTGTAAATCcctttatttaactttttaaagttCAGTCTCGACCATCCATTGAATGCGTCAGAGAACAGACTCTCCAGCAGTAGAGAGTGAACACGCATCTGAGTTGAGGAGCAGGCTGGGACTGCACCCAAAACTGAAGGTCATCGTTTTGCTTAAGAGTGAAGGTGCTTTTGCTTTTGGCGAGGGAGTTGGGAGAGGGGTTCGGGGGGAaggatttctttattattattatttctaagagggagggaggaagaggaaaaagTGTGGGGGTGTGTTGGGCGTTTAGGGGACGGAGATGTGGTACGGGCTCCCTGGAATGTGCTCATCCCCCCATTTGACCACTAGGATGTATTCGCCCTTGTCTTTCAGCTGGTATGTCACGTTGTAGAGCCGGTTGCCCAGATGCTTGACCAGAATCTCTTCACAGGGGACCTTGGGTCCGTCCACTCCCACCAGCAGCATGTTCCTGCCTGTGGAGCCAAAGAAGGAACAGAGTTTACAGGAGAATACATTGAGCCACAG
>TU73197
ttgaatggccaCACAAAAACAACCCNNNNNNNNNNCCCCCATACACATTAGTTCTTGATTGATTGTGGCAAAGACCAATATAGAAACAGTCACCTCACCCCCCCTATTGCCGCACTACAAACTGTCCTGTTGTGAAAATGGAGGTTATTCCCTTGTCCCTCCCCACTTTGCAGTCTATTTCTACACTACTGCCTAAGTGGATAAGaaacccaccccaccccagaACACCACATTAAACCACTTTCAATTTCAACAAAGAATCCCAGATAAAGCAATTGATTGCCTAGATCTTTGGCTCCACTGGTGGTTTGGttgtgcaaagaaaaataaaaggcagtgGCTAATTAGCATGTGCAGCAGTTAAGCAATCCATTCCACACTAGGGAGTCAAAAGCCTCCTCCGGCAGTCTGCGATAAGCAAATCACTTCTACACTAAGACAGCACCTCTGCTGTCACAAGAGAAAAGGCAAACGCACTCATTCTACCAGGACAAGATTAGCAGCCACTATGGCCCTGGACACACTGTAAATCcctttatttaactttttaaagttCAGTCTCGACCATCCATTGAATGCGTCAGAGAACAGACTCTCCAGCAGTAGAGAGTGAACACGCATCTGAGTTGAGGAGCAGGCTGGGACTGCACCCAAAACTGAAGGTCATCGTTTTGCTTAAGAGTGAAGGTGCTTTTGCTTTTGGCGAGGGAGTTGGGAGAGGGGTTCGGGGGGAaggatttctttattattattatttctaagagggagggaggaagaggaaaaagTGTGGGGGTGTGTTGGGCGTTTAGGGGACGGAGATGTGGTACGGGCTCCCTGGAATGTGCTCATCCCCCCATTTGACCACTAGGATGTATTCGCCCTTGTCTTTCAGCTGGTATGTCACGTTGTAGAGCCGGTTGCCCAGATGCTTGACCAGAATCTCTTCACAGGGGACCTTGGGTCCGTCCACTCCCACCAGCAGCATGTTCCTGCCTGTGGAGCCAAAGAAGGAACAGAGTTTACAGGAGAATACATTGAGCCACAG

Function

symbol description
flna Predicted to enable actin binding activity. Human ortholog(s) of this gene implicated in X-linked recessive disease (multiple); bone development disease (multiple); heart valve disease (multiple); periventricular nodular heterotopia; and terminal osseous dysplasia. Orthologous to human FLNA (filamin A).

NR:

description
PREDICTED: filamin-A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73196 True 2937 lncRNA 0.48 3 44481052 44488354
TU73197 False 1045 lncRNA 0.47 3 44481052 44526239

Neighbor

gene id symbol gene type direction distance location
AMCG00009691 NA coding downstream 126299 44346470 ~ 44354753 (-)
AMCG00009692 NA coding downstream 138761 44339063 ~ 44342291 (-)
AMCG00009693 NA coding downstream 152698 44323985 ~ 44328354 (-)
AMCG00009690 gdi1,LOC105013583,LOC106567106,LOC106572620 coding downstream 187934 44284878 ~ 44293118 (-)
AMCG00009683 NA coding downstream 216930 44256415 ~ 44264122 (-)
AMCG00009704 plxna3,LOC107743094,LOC107601745 coding upstream 127612 44653851 ~ 44654614 (-)
AMCG00009705 NA coding upstream 129805 44656044 ~ 44657724 (-)
AMCG00009710 NA coding upstream 156425 44682664 ~ 44693533 (-)
AMCG00009713 LOC107601746 coding upstream 262891 44789130 ~ 44808487 (-)
AMCG00009718 LOC106566500,LOC105009055,LOC102795717,LOC107584920,LOC107735484 coding upstream 395850 44922089 ~ 44927038 (-)
G58511 NA non-coding downstream 155479 44325157 ~ 44325573 (-)
G58459 NA non-coding downstream 359985 44115650 ~ 44121067 (-)
G58457 NA non-coding downstream 370769 44109969 ~ 44110283 (-)
G58456 NA non-coding downstream 371337 44109336 ~ 44109715 (-)
G58452 NA non-coding downstream 376342 44097276 ~ 44104710 (-)
G58585 NA non-coding upstream 16704 44542943 ~ 44543177 (-)
G58605 NA non-coding upstream 132177 44658416 ~ 44659098 (-)
G58611 NA non-coding upstream 135642 44661881 ~ 44662333 (-)
G58612 NA non-coding upstream 138499 44664738 ~ 44664945 (-)
G58613 NA non-coding upstream 138883 44665122 ~ 44665331 (-)
AMCG00009672 NA other downstream 485398 43989511 ~ 43995654 (-)
G58333 NA other downstream 535755 43482421 ~ 43945297 (-)
G58025 NA other downstream 1807345 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 2424924 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2654118 41814559 ~ 41826934 (-)
G58584 NA other upstream 15655 44541894 ~ 44542809 (-)
G58589 NA other upstream 39830 44566069 ~ 44566834 (-)
G58653 NA other upstream 256679 44782918 ~ 44785134 (-)
AMCG00009739 NA other upstream 642702 45168941 ~ 45230457 (-)
AMCG00009742 NA other upstream 725398 45251637 ~ 45277597 (-)

Expression


Co-expression Network