G58660


Basic Information

Item Value
gene id G58660
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44918043 ~ 44921637 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73326
GCGGGATGGAGCCGAAATGGCGGAAGCGGGGATTTGCACTGTCGCGACCTTCCCCGGCTCGGTCGAATCTCTAGTGGAGAGAGTGAAGCCGGGGTCGGGATGAACCGGGACTCGGGCCGGGGccggtgggggggtgggagaggtCACACTCGAGGTTACTGGTTTATCTCTCGACCGCCAAGGCTACTGCATCTCAGAGGACTCCGTGTGTCTGTCTTCTCCTCTGGACCGATGACCCCCATTCGTTTTTGAATCCACTCGAAGGTGCAATTCGATCACTGCGGACCCCAGGGCTGGCCGAGGGGCGGGGTGCTGGGACGGGCCGCTTCAAACGAAAGAGCGGGGGCGTTTCTTTTGGAGATCATTCCTCAAGTTTTGAGtttcttttgaaatggaaaagacaAGATACTCACAGCCTGATCTGGCCGTGTGTTTTAGCCTTACTTTGTCCgctatacattttttcttatcGGGCACAACTTACAAAGATTCTGATTGCGATCTTCCTTCGGTCCGGTGCTCGTAGACGGGCCGGTTCATTTTAACGTCGCCGGAGACTCTCTGGACGAGCCTGCGGCCGTCCGGACTTTTACcagatgtttaattttgtatttttatgaaatggTCTTATGACAGCTTGAATCCTATTTAATTCTGCTCCGGGTCCTGTGCTGCCGGGGGAGGAGGCGCGGCGCCGCTCTGCCCTCGCGCAGATTTGCAATGCAGCtgtacagtatttttgtattgtgatgACTATTGTTATATCCTCTGTCGTCTGGATCAGATGAGTCGGGGGACCACGGCATTGTGACCATTccatcttctctctcttttttaaatgatggggtggattgttttgtattatgatgatattatctcacacacagacacgcacacatacagtctctctctctctctctctctctctctctctcacacacatacagtctctctctctcacacacacacacacacacacacagtctctctctctttctctcacaagCACAGTAGGCAGTACGGGTAGAGGTTGAATGAGACACTGACTCAATTCGATCCCCTTTTCGATTCCGCTCtagttttatataatgtatagatTTGAATATATTCAGTTTCCTCCTGGttgttttaaccttttattgCGCTGACACGCAGAGTGCGGTGTCTGGGTCACCTGTGTGCCGTGGCGTGAGTGGGAGCCCCCTGCAGTGCATCGTGGGCCGCGCTGGTGGCGGTCTGCGATCCTCCTGCTCCCAGAGTGAGCGCTCGCTGTGCAGAGACACCCCCCCTCTCAGAGTGACTGCAGGCCGGTCCAGGGTCCCGAGGCTCGCTAGACACAGAGTGCACATCATTCTGCAGACAGGGAACGGGGAGACTGCAGATCAGATGGAGcccattatatatttaaattaatttttaaatgagagaaaacTAAGTATTGGCTCCAGCCCCAAGTCAGAAGTGTCTTTGAGTACCAAACCGCTTTACCCAAGACAgaactcatttatatttatatatacatacatacatacatacacagctctggaaaaaagtcaatgttaagtggtctcttcatttttcccagagctgtgtatgtgtatatatatatatatatatatatatgtaagcaGACGCACCTCTTTTGTCATGTAAAGTGTAAATACTGTGTCAATCCACCGAAGCGGGGCGACGGAGATCAGTATCAGGGTAGTGTCCCCGTAAGATACCACCAGTTGTGCAcagtttttaaactttatttaactgtttaaaGCCTGCGTTCATTCAAGGATACAAAATGTCCACAGCAGCGCAACGCTTATCATGGGCAGGGAGAGTAAAACAGCACAACAATAGCGAAATGCGAGTGCTGCTCTGGGGCGCGAGGCATGTTTCCACGATCAGGTGCTGCTCTAGTGCCCGGGACGCGTTGGGGCGGGGGGGTCATCACGGtcacatttttgcatttttctcctCTTATCCTTGTGGAGGGAATGTTACAACATCTCTCGCCAGACTGAGCAGAAACGCCCCCCAGGACCGAGCCGGGGGCCTCGTCACACGCAGGCCGACTGCCGGACGATGAGTGCTCTGCTGGACGGCAATCGTGGTTTTCGATGACATCCgtctcctttttattttcatttccagaaGGCCACTACTTGCCCACCTCTGGCAGTGTACATTTCAGGTGGACAGTGGGGCTGGGGGGTCGATGGATTATTTTATCGCCCTCCTCTGCAGGGAGGGTCGCACTGTCCCTAACAGAGAGACGCAATGAAACCAGCGACGCGGGCATGGGTACGCTCGTACCTGCACACAGCGGCTCTCTACTGTGTATATACACCtacttatgtatgtatattgtattttcatacAGGATTTTGCCAATTTTTAAGGATGTTTAATTGATTGTAGAGGGAAGAGTTATTTTTCTCGCATGCTGTAAAAGACAAGGtttgtaaataaagaaaaactattttaaatgaagcGCTGTTGGTGGTTGGCCTGTTGTTGTGCCTCCTGCGTGTCTGAACCAGTCTGTGACACGCTTGGCCCACAGTGCCACCCTGTGGGCAGAGTGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73326 True 2584 lncRNA 0.50 2 44918043 44921637

Neighbor

gene id symbol gene type direction distance location
AMCG00009714 usp11 coding upstream 1200 44901426 ~ 44916843 (+)
AMCG00009712 LOC107584919,LOC106904750,LOC106522891 coding upstream 36318 44856527 ~ 44881725 (+)
AMCG00009709 NA coding upstream 137075 44768874 ~ 44780968 (+)
AMCG00009707 LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533 coding upstream 149815 44764036 ~ 44768228 (+)
AMCG00009708 otud5,LOC106571839 coding upstream 171714 44738679 ~ 44746329 (+)
AMCG00009715 NA coding downstream 6230 44927867 ~ 44933814 (+)
AMCG00009716 elk1,LOC103384389,LOC102208123,LOC100703163 coding downstream 29036 44950673 ~ 44962284 (+)
AMCG00009719 NA coding downstream 45242 44966879 ~ 44969079 (+)
AMCG00009722 NA coding downstream 54023 44975660 ~ 44984837 (+)
AMCG00009720 NA coding downstream 67636 44989273 ~ 44998008 (+)
G58666 NA non-coding upstream 24965 44892845 ~ 44893078 (+)
G58527 NA non-coding upstream 434796 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 557981 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 592470 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 748254 44169485 ~ 44169789 (+)
G58668 NA non-coding downstream 447 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 221538 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 272886 45194523 ~ 45198264 (+)
G58825 NA non-coding downstream 345302 45266939 ~ 45275033 (+)
G58830 NA non-coding downstream 354851 45276488 ~ 45277596 (+)
AMCG00009706 pim1 other upstream 157985 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 266076 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 314434 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 347512 44561777 ~ 44570531 (+)
G58522 NA other upstream 510475 44386497 ~ 44407568 (+)
G58747 NA other downstream 134428 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 586130 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 638340 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 651633 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 654902 45576539 ~ 45584727 (+)

Expression


Co-expression Network