G59002


Basic Information

Item Value
gene id G59002
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45634682 ~ 45635314 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73750
GTCCCAGCAGAGCCACACGGTGGAGAAGTGTCCCCAGCCCAGCTTCCTGACCACATGGTAGCGCCCGTTGAACAGGTCCCCGATCTTCACCGGATAGTACCCCCCTGCGCACACAACGACAACACCACCACACCGTCAGCACGACACCGACCCACACCGGCCTCTGGACAGCGAGGCGGAGCTTGGTGAATCAGACTGGACACTGAGAGCCACACCACACATGGGGGTTCAAAGACGGACCGGGGGGACCATCGAAGGACACGGAGAAAGTGATGACTAAGGCACAACCGCACCCCCCTGGGCCGATCAGACGGGTGGATCGATCGGTCGGTCAGATGGTGCGACAGCCCGTACCTCTGCAGTAGTCAGTGGGGTCCTCCTGCTCCTCGTCGTCGGAGCCCAGGAGCTCGGCGGGGGGTGGGGTGAAGTCCGGGGGAGGTGGCGTCAGCAGTGGCGGGGGTGGAATCTGTTCTGAaggatgaggaggaggggaCGGGGGGGTGGGAGGCAGCACCGCCGCGGGGGGAGCCTGAGCGTCCGGGGGCGGGATTAGGGGAGGGGTCTGTGGAGGAGTGACAGGTCGAGGGAGGGGGCCGTGCTGATGGAGGGTCTCGGGTGGGGGGCTCTGGGGCC

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko04152 AMPK signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU73750 True 633 lncRNA 0.66 1 45634682 45635314

Neighbor

gene id symbol gene type direction distance location
AMCG00009756 NA coding downstream 176312 45457812 ~ 45458370 (-)
AMCG00009754 NA coding downstream 232267 45397189 ~ 45402415 (-)
AMCG00009745 mecp2,LOC105898998 coding downstream 283502 45345981 ~ 45351180 (-)
AMCG00009744 NA coding downstream 316354 45315275 ~ 45318328 (-)
AMCG00009746 LOC105912249 coding downstream 329309 45287018 ~ 45305373 (-)
AMCG00009767 NA coding upstream 42927 45678241 ~ 45678855 (-)
AMCG00009771 smc1a coding upstream 48246 45683560 ~ 45695262 (-)
AMCG00009770 hsd17b10 coding upstream 66619 45701933 ~ 45704510 (-)
AMCG00009768 huwe1 coding upstream 70553 45705867 ~ 45738830 (-)
AMCG00009773 fam120c coding upstream 127863 45763177 ~ 45771249 (-)
G58982 NA non-coding downstream 5309 45591747 ~ 45629373 (-)
G58978 NA non-coding downstream 49311 45584803 ~ 45585371 (-)
G58979 NA non-coding downstream 51675 45582506 ~ 45583007 (-)
G58940 NA non-coding downstream 79968 45473535 ~ 45554714 (-)
G58904 NA non-coding downstream 261610 45372758 ~ 45373072 (-)
G59003 NA non-coding upstream 76 45635390 ~ 45635699 (-)
G59022 NA non-coding upstream 29160 45664474 ~ 45664841 (-)
G59042 NA non-coding upstream 40389 45675703 ~ 45680120 (-)
G59077 NA non-coding upstream 110627 45745941 ~ 45746254 (-)
G59090 NA non-coding upstream 112243 45747557 ~ 45748458 (-)
AMCG00009755 NA other downstream 169305 45458743 ~ 45465377 (-)
AMCG00009748 NA other downstream 308627 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 357085 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 404225 45168941 ~ 45230457 (-)
G58653 NA other downstream 849548 44782918 ~ 44785134 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 2433 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 113362 45748676 ~ 45757951 (-)

Expression


Co-expression Network