G59091


Basic Information

Item Value
gene id G59091
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45759675 ~ 45763138 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73858
TACGGGCAGAGACAGACAAGAGAAACAACCTATCTTTACTAAAAgaatagattttatttcagcACTGTAAGTTTCCTTCCAACAGTAGAAGCAAAACAGCCAACATCCTCTTTTCACCTGAAATCTTCTGCTCACTTGTTCAATCAATCGTTTGTGTTCCACTAATACAGACCAATAGAAACCCCTTCCTCCCAAACAAGCAGCTCCTTCTCgcttaaaacaaatacaaaataaaaatgaaataaaacaaaaaaatccaaaagaTACAATCAATAATCACGTCTCTTTTCACAAGACTCCAACAAAATGACTGGtttcattttccaaaactaaaaagaaaagaaaaaaaaaaaacgcaaaaaaaaaaaaacgcaaaacaaaatacaatccCAAATCTTTCCAATTCTAACACCGAATGTTGAAGGTGTCTCGGCTGACGGAGGGGTCTGTCTGTTATGCGATTGGATGTGATTTTTGCAGGGAAAACGAGCTTGTAATACCGTCTTTATACCACTAGATGTCGAGGGGGAGTTACTAACAGCATTAAAACGAGGGCGACCAGAATGACAGGACCAAAAAACGGCAAAGAGTAcagatttacttttattaatttcactATATGTGTCTTCATATATACTGTGTAGATTACAAGCAGGGAGCGGTGCTAAAACTACAATTCAAAAATTAAAACCCCAAAAACAGATCCTTTTCTCAAACCAGGTCAGTGTAGCGGATGCCAAACTAAATAAGAACGCGACGCGTTTTCAGATTGTGATCTTATGAAACTAAAGGTTGACTTTtcgtaatttattttcagtattgtcGGTTTCTTGTGTATTTCTTGCGTTCAGGTCTCGTTATCTCACTAAGAAGCTCTGTCCTATACTCACAACTACACAACGTTATACTGAgttaataccaataataatatgGCCTACTATCGATCGGTCAGTCAGTGGGAGTGGACGGGGGCACGGGAAGGagaagagagggatggagagatggCAGGatggaggggagaggagaggaaatgggagggacagacaggtaGGTAGGCAGGCAGGGAGTCAGTACAAAAGCATTCTGAATTATTActaatatatagattttaaaaaacgttaatttttttgttgtgttttgtattttgtatttttttttgtttactttatggTTTCTTCTCCTACAAGTACAAGAATCATCACGACCGAGAGGAGGGGGGTCTGAACAACTAGGACAACGGGAACAATAGTAAGAATGTCAGTTAGGGTCTAagtattactttaatttatttttaagttgtgttATATAAATCAGCTTTATTATCTAGAAGagttataaacaaaaaaaaaatacaatgaggAGAGCGGGGGGGTATGGGTCCAGGACTCGGAAGCAGAGTCTCTGaaaactacaaagaaaaaataggAACATCTGTCTGTCAACCCAGACAAGATctataaactaaacaaaaagacaCGACAGCATTCTCTCAACACCACCAAgaggtgcctgtctgtgtgtcagagtgtgtgtgtgtgttgtgcgtgGGTGTCCATCCGCCTGTCGGTACGTGTGTTGGTCAGTGTCACGGTGTCCGTCTGTGCTACTGTAGCCGTCCTGGTGTCTGTGTGAGCACGTCAGTCCGACTGTAGTACCGTGTGTCAACGTGCGGTGCTGTCACCGTGTCTGTGACGTCACAGGTGGAGACAGGTCACCCCCGCAGCTCCACAGCTCGGAGCACAGCCTGCCGGGGGTGAGCAGTCAATCacatcaaaaatataaacgTAGAGAAACAGACCGATATTTTAGtgggttaaagaaaaaaaacaaaggaataatCTAATAATCCAAAAtgataatacagtacaaatgtgGGCAGACAGCAATACAGATGGCAAGAAATagaaacaggattttaaaatgattattattaatatttaatttgttatatatatatatatatatatatatatatatatagatagataagatCTGTGGCATGAGCAATTATAATTCATAtcatcttttatcttttttaaatgatcatatTTAGGTCACATCTCAGGCTGAACGAATAAGGTGCTCTGCAGGACGAGCCGAACCGTGCGGTTTGCTgttacagctgggtttttaaatgtctggggggggaggggagcagGGCCACTCAGTGCAGGGAGATTGGACACGGGGGAGGCAGGGAGGATCCAGGGAGTGAAATCCTCGTATTTTAGTCCCTAATTTTTTAGCCTGGCATGGGAGGGTTAATCCAGCTGCTGTCCGCACCTGCCCCGCTGAGCTGCCCTCCTGCTCCGCTGTGCAAGTGCTCAGAgacatttaaacatatacatttattttttggtgcgaaacaagattttaaatattctctCCTTCGAGGGGAGTTGGGGATTGTTAAAAGTGACAATTTGtaaatttatatttacagttaaagtgatttaaaaaagaaagatatttCAGTCGGTGTCAGAGGCCGCTTGGCTACAGCAGGCGGGGGTTCTCCACCCTGCCCCCAGGGGCCAACGCTCTCCTGGCGTGCACTCGCTTGATTGAGCATTTAATTGGACTTAATTAGACCTAAACTGCTCTCAGAACCTGAAACCCACCGAGACTCAGAAGGTGGCGAAGACcctgaaaaacattaaaaatgaaaccgcattaaaattcaaaatgtctAAAATCAGGCAAACTTTAATTGGGTCCAATTAACATTGGAATTGTGGAGGGGAGGGGCAGACTCCTGTGATTGTCAAAATGAACTCAAGATGGACATCATTATCGCCGGACAGACAGGCCAGCGGGGCGCGGGGGCGGGCTGGAGCTCCGGCCCTGTGCAGAGAGCCACCCTGGCCTGGCCGAACCGCAGCCTTAATTGAAACGgattgcttaattgaatttcAGGTTTGTCAATTTGCAAGTACTTTTTTGTTCCCCCCCAGTTCTTATAAAGTGGGTTTCAATCTGTAAAAACATCATTGGTTAGATTTCTTTTCCATTTAAGAATGAGAAgaatcaattcaattaaaacatcctCGTCAAGccaattaaaatttaaattaaggctacaagaaaagaaaaatcaactgAGCAGTAACTGCAGCTAACCGAGCCACGTTGGGCTCCAGCCAGAACACTTCTGAGCCCCCTACAGCACCGCCTGGGGCCTGGAGCCTGTGTGCATGTATAGTGGAGAAAAGAGGGGACGGGGGACTACATTTCCCATGAGGTTGTGAGCCTAGCAGCTGACAGCACAACGAGGGTGTCCTAGCAAGCAGAGGCGCTCGCGCTCTCTCAGTTTCAGACACTCAAGTGCCGTCTCTGTCCCCAGGCTGCTCCTCTCACCACTTCACCCCGAAGCACAGGAACAGCTGCCtctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73858 True 3392 lncRNA 0.43 3 45759675 45763138

Neighbor

gene id symbol gene type direction distance location
AMCG00009762 NA coding upstream 99189 45656761 ~ 45660486 (+)
AMCG00009765 NA coding upstream 103438 45650084 ~ 45656237 (+)
AMCG00009764 LOC103384391,LOC107373447 coding upstream 112134 45643238 ~ 45647541 (+)
AMCG00009763 plxnb3,LOC101165957,LOC102313277,LOC102780548,LOC102199036,LOC101474638 coding upstream 130297 45598607 ~ 45629378 (+)
AMCG00009757 NA coding upstream 228239 45521353 ~ 45531436 (+)
AMCG00009772 NA coding downstream 112495 45875633 ~ 45879015 (+)
AMCG00009778 NA coding downstream 141749 45904887 ~ 45913188 (+)
AMCG00009780 NA coding downstream 156293 45919431 ~ 45921344 (+)
AMCG00009784 NA coding downstream 342262 46105400 ~ 46109996 (+)
AMCG00009785 NA coding downstream 441970 46205108 ~ 46217730 (+)
G59087 NA non-coding upstream 1406 45757110 ~ 45758269 (+)
G59086 NA non-coding upstream 2905 45756252 ~ 45756770 (+)
G59085 NA non-coding upstream 3719 45755589 ~ 45755956 (+)
G59083 NA non-coding upstream 6003 45752722 ~ 45753672 (+)
G59082 NA non-coding upstream 7178 45752070 ~ 45752497 (+)
G59128 NA non-coding downstream 110985 45874123 ~ 45874432 (+)
G59142 NA non-coding downstream 265557 46028695 ~ 46028969 (+)
G59152 NA non-coding downstream 302290 46065428 ~ 46133506 (+)
G59156 NA non-coding downstream 349082 46112220 ~ 46112856 (+)
G59169 NA non-coding downstream 406623 46169761 ~ 46187549 (+)
G59084 NA other upstream 4560 45754586 ~ 45755115 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other upstream 174948 45576539 ~ 45584727 (+)
AMCG00009760 NA other upstream 183711 45573270 ~ 45575964 (+)
AMCG00009759 NA other upstream 187420 45559977 ~ 45572255 (+)
AMCG00009761 NA other upstream 248638 45507767 ~ 45511037 (+)
AMCG00009782 LOC108266008,LOC103385383 other downstream 181494 45944632 ~ 45997710 (+)
AMCG00009781 NA other downstream 236904 46000042 ~ 46022184 (+)
AMCG00009786 NA other downstream 340998 46104136 ~ 46128356 (+)

Expression


Co-expression Network