AMCG00009821


Basic Information

Item Value
gene id AMCG00009821
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 867680 ~ 877258 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009821
ATGGCGAAGCTGGAGGCAGTGCCGTTGCTGAGTGactgcccccccctccctggCCGGCAAGGCAGCATGGGCAGTGTGGGCAGTGGGGTGGCAGGGGAGCAGGAGTTCGCCATGAAAAGTGTGGGTACCCGCACCCAGCCAGGCACTACTCGGCCTAATGGCCTGCCCTCTCGCCGTTGCCCTGCAGAGGACCGCAGCCACAGCAACCCCGCCATCCACACAACACCCACCACCACtgccagctcctcctcctccacccccccccaacctGTGGGCAATGCACTGTACTTGAGTGGGGAGCTACGGCGGGCAGGGCAGCGTGGCCTCAGCCTGGATCTCTGTGGGAACAACGTGGCTGCCAACAATGAGAGGAATAGTAATGTTGGGGGTGTGGGGAGTAGTACAGGCAGCCTGCCCCCACCCCAGTACAGAGACCCCCCAACGTTCAAGCCTGTGGTTCCCAAGAGTTTCCATTCCATGCAGAACCTTGTGTGCCCCCCCCAGACCAACGGGGGCCGGAGTGTGGGGGGTGGTGGCAGTGGTGGCAGCTCAGGCTCAGGAGGTGGTGTGGGGGGGCACCGGGACAGCCCAGGGGGGGGCAGTGCAGGCGGAGGGGCAcctagagacagacagacagggggcGGTGGCAGGGGTGGTCTGTCTGACTCAGGCAGGAACTCTTTGACTAGCCTCCCCACCTACACAGGCTCTGGCAGTGGATATggccccccccaccctttgGGGCCCCTCAGTGCCTCAACTAGCCACATCAACCGGCTGGGCATGGCAGGTGGGGGGTGCGGGGGCAGTGGCGGGGGTGGCAGTGGGGGTGGGTATGAGAAGCCTGGGTACCAAAACGGTCTGAGTGCCTCAGATAGTGGCCGTTCCTCTTCAGGAAAGAGCTCCTCCTCTTGCCAGCGGCTTAGCCACCTGAGTGATGCCCCACAGCTGcgcccctccccctcctctgaTGATATTATCCATGACCTGGAGGACCGCCTCTGGGAGAAGGAGCAGGAGGTGTTGCACATGCGGCGCAACCTGGACCAGAGTGAGGCTGCGATCGTGCAGGTGTTTGAGGAGAAGCAGCGCgtgtgggagagggagatggaggacCTGCGCCAGAGCTATGCCTGCAAACTGCAGCAGCTGTCCCGTCGTGCTCAGAGGACCCAGCAAGCATTACAGGCACAGGTGGGCCGTTTGCAGCAGGACAAGCGGCGACTGCAGGAGGAGCTGGCCAGCCTGCTGGCCCATCGCGAGGAGTTGGAGAGAAAGTGCCTTGACTACAAGAAGGAGCAGGCTGATATCCTGCCACGCCTGGAGGAGACCAAGTGGGAGGTGTGTCAGAAGTCTGGGGAGATCTCCCTGCTGAAGCAGCAGCTGCGGGAATCACAGGCAGAGGTGACACAGCGGGCGGGGGAGATGGTGTCTTTGCGCACCCAGCTGAAGGAGCTGGGGGCCCAACTGCgggagaaggaggaggcagTGCTGGGCCTCAAGGACTCCTATAGCAGCAAGAGTCTGGCCCTGGAGCGCTGTGAAGGGGAGCTGCAGAGGACACTGGCTGAGGTGTCTCTGCTCCGGGAGAAACTGGGCGTGTTCGAAGCAGAGGTGCTAGGGCTGAAGCAGGCACTGGGGGAactggggggggcagggaggtgGGTGGCGTTACCACCCTCCCCTCAGAGCCCCTCTGACGTGGGTGAAGGGTCCTCCttcagcccccccaccccaccagcAGATGCCCTACTGAGCCTGCAGAGTGACGAGGCCAAGGCCCAGAGACAGGCAGAGGCAGGGGGTATGCGGCGGCAGCTGGAGAGGCTACAGGGTGAGCTGAGACTGGAGAGACAGCAGAGGGAGAGGCAGGCCCTGAGCTTTGCCCGTGAGAGGCACACCTGGCAGGGGGAGAAGGAGCGAGTGCTGAAGTACCAGGCACAGCTGCAGCTCAGCTATGTGGAGATGTACCAGAAGAATCAGGCTTTGGAACAGCAGGTGGGCCAGCTTAGCAGCAAGCTCTCCCCATCTCCCACCTCCCTACCCTGTCTGCcgccacccctccccccaccactCCAGCTCCCGCTCTCGCCCCCCTCCGCAGATGACAGGAAGCCTCTGCCCACCCAACTCACCCCTCCCTGGAGTGGCCCCTCTCGCCTGGAGAGGATTGAGTCCACAGAGATATAGCCACACCTCCCTCCAtcctcccactaccaccacctcTCAAACAAAAAACCCACACCCACCCTTACTGCCCTGGCCCATGCTGTGTGCTGGCCGTTGGGCTGGAGACTGGGGATGCTGTGGACTGCTGCTGATAGTACTCGAGACAGATTGCTGCAGCTGCTAGGACAGGTGTGAGCAGGTATGACTAAGCAGGAATATGTTTGAGAAGGTGTGAGCTGCTCTGAGATGTGAGACTGTCTTGTGCAGGAATGGGACTGCTGACTGGAGCTGGACACAGCGGGTCTAAGCAGACCAGGCTGGGCTCATActcatactgacacactgatgctCATACTCTGGCACACAGACACTTAATGCTGATGTGTTGACACACTTAGCACCCGTCCCCACCTTTCACCTTTTATACTGCTGTCCTCCTGGAGTTTGTTTGTCATTAACTTCCCAGACCCCACCCTACTCGCTGACTGCCTTCTTATCTGTCTTTGCCCTCTTCTCTGATTCCTCCCAATTCCCATTATCCCACatcagtcagccagtcagtcagtcagtttcaGGTCCTatggggaagagagagacaaactGCGGGGCTGAGGAAGTGTCTGTTAATTGCTGGAGTCCTGTTGGAGGAGAGACTGCTGTGATGGTACTGGgcccagagacagacagagagccaATGCTGGGGAGAGCAGAAGTGCGCTGCACAGCACACACCTGGACTGTTAAGGACAGTTCATCACTCTGGGGGTACTTCAGCTACAACCAGACTCCTACTGAGATTAAGAATTACTTGAAAAACTTTGCTGgactttaaatgtttgttttaaactaaacaacaaacacacaaaacaaaatgaaactaaacaagAAAGGCTTTGTGACATGTAGTACGTAGCTGAATCTACTGATGGTGTTtcctgtggggaaaaaataggAGAAAGGCggtgggagtcctggctcccagtGAGCGATGGAACAAGAGTGAATACTTTGAATACTGTGACTGTAGTGAAAGTgaatgtgagtgagtgagtgttaGTCTGTGCGAGTTTTCAAATGAGTGACTGCtagtgtatgtgagtgtgtgatgCAAAGTGAGACACTGTGTCAGGGTTGACAGACACGTGATAGAGAGGGTAGTGTGAGTGTTGGGTGTGTCATGCAGACGCCTTTCTCCTATAGACACTGGATGCATGGACATtggactgacagacagacagacagataaacagatGTGCTTTGTAGTCCTACAGGGCCATACTGTTTGTACCATGAGAGTGATCCCGCCGTTGTGTCTGGAGGTGCTCACACTAATGTGGCATGGCTCtgcaaatagaaaacaaatatccCATCTGACATCCCAGTCATTCTATGAGACACAGTCACCTGATTGGTGATGTATAAAGTGgccccaccccccccagcaCTACACTGCTCCTCTCATTCTGTCGGTAGCTGCTATTGCACTAACAAAAGAGTATGTATATGAGAGATGGTGAGGGAGGTAGAAACTAAGAGGGAAGGAGACCAAGAAAGGTGacgtaaagatagagggcaagagagagaggggacagagaTGTACAGAAGGGATATATACAGAGTGGCAGGGGGAGAAGGATGGGATTTGAGACATtgagagaggtggagaggagACCGATGAGATGCAGGTGACAGAGAAAGTGAGAGGAAGAAGCAGAGGGGATAGAGATAGAGATATGGACACAGAGGTATGTGCACATTGAACTAGCTCTgcctcagtctctcagtgcaGACAGACACCCTCCCTCTATATCATCTGAGTCTGCaggctctctcctctctgcgGTCAAATATGCTGCTATGTGCTTCTagtagaaaaatacagaaaagtgtACTTGGATGTAAATATTATTGCTATCTATGTGTACATATCTAAGATGGTATACCAAGATATTGTGTGTGAATAACTTTAAGAGGATtattgtgaattaattaattatttaaacagacatttcagcttttatttttaaaaatatataaatatatatatatataactttactTTTGACTTCCTACTACATGGTACAGGCGCAACAAACCTATCAAggctctgtatgtgtgtttcctttttattattataattatggttattattagtGTAATGTTTGACAATGATAAAATGCTaccaatgtttttgttttttacaattttttattttattttatgatttatgtttATAACTGTAATTGCTTGAATAAAAGCATAtccttgcaaaaataaatataaaaacataaacaaatatattaataaaacaaacaaataaa
>TU94510
TCATTCTCACTTCACTCACCACTGCGTGACAGCCTGTGTGTGCACATTGGATCTGCGACTGAACATGTGATTCATGTCTCCACCTGCTGGCTGGCCTTTGACCCCTGGTTGTTGTTGCCATGGCGAAGCTGGAGGCAGTGCCGTTGCTGAGTGactgcccccccctccctggCCGGCAAGGCAGCATGGGCAGTGTGGGCAGTGGGGTGGCAGGGGAGCAGGAGTTCGCCATGAAAAGTGTGGGTACCCGCACCCAGCCAGGCACTACTCGGCCTAATGGCCTGCCCTCTCGCCGTTGCCCTGCAGAGGACCGCAGCCACAGCAACCCCGCCATCCACACAACACCCACCACCACtgccagctcctcctcctccacccccccccaacctGTGGGCAATGCACTGTACTTGAGTGGGGAGCTACGGCGGGCAGGGCAGCGTGGCCTCAGCCTGGATCTCTGTGGGAACAACGTGGCTGCCAACAATGAGAGGAATAGTAATGTTGGGGGTGTGGGGAGTAGTACAGGCAGCCTGCCCCCACCCCAGTACAGAGACCCCCCAAGTGCCAGCCTTGCCCCCTCCAGCTCAGGCCCAACCTCACTGGACAACCACAACCCACCCAAGATCCTCCCCGTGTCCGGCAAGCTGGAGCAGaATAATGATGGATTGGTTCGTCCCTCAGCGTTCAAGCCTGTGGTTCCCAAGAGTTTCCATTCCATGCAGAACCTTGTGTGCCCCCCCCAGACCAACGGGGGCCGGAGTGTGGGGGGTGGTGGCAGTGGTGGCAGCTCAGGCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009821 True 4490 mRNA 0.53 5 870831 877258
TU94510 False 798 TUCP 0.62 3 867680 871735

Neighbor

gene id symbol gene type direction distance location
AMCG00009825 NA coding upstream 8004 851446 ~ 859676 (+)
AMCG00009822 smyd1b,LOC108430330,LOC107661523,LOC107712675 coding upstream 47416 816224 ~ 820264 (+)
AMCG00009823 NA coding upstream 79301 785525 ~ 788379 (+)
AMCG00009819 dqx1 coding upstream 118001 748029 ~ 749679 (+)
AMCG00009820 idh3b,LOC107737870 coding upstream 165571 688899 ~ 702109 (+)
AMCG00009824 NA coding downstream 6155 883413 ~ 885911 (+)
AMCG00009836 NA coding downstream 21020 898278 ~ 902332 (+)
AMCG00009843 NA coding downstream 43630 920888 ~ 922685 (+)
AMCG00009841 NA coding downstream 71871 949129 ~ 949689 (+)
AMCG00009842 NA coding downstream 84748 962006 ~ 974452 (+)
G75644 NA non-coding upstream 121608 742885 ~ 746072 (+)
G75642 NA non-coding upstream 126650 740479 ~ 741030 (+)
G75600 NA non-coding upstream 258905 586864 ~ 608775 (+)
G75572 NA non-coding upstream 547781 304793 ~ 319899 (+)
G75556 NA non-coding upstream 760635 106073 ~ 107045 (+)
G75743 NA non-coding downstream 154208 1031466 ~ 1031717 (+)
G75767 NA non-coding downstream 293448 1170706 ~ 1174954 (+)
G75817 NA non-coding downstream 520900 1398158 ~ 1399008 (+)
G75822 NA non-coding downstream 550753 1428011 ~ 1428389 (+)
G75826 NA non-coding downstream 608228 1485486 ~ 1486092 (+)
AMCG00009838 NA other downstream 107338 984596 ~ 995847 (+)
G75745 NA other downstream 159948 1037206 ~ 1037442 (+)
AMCG00009846 NA other downstream 389601 1266859 ~ 1298242 (+)
AMCG00009844 NA other downstream 445360 1322618 ~ 1327593 (+)
G75807 NA other downstream 456709 1333967 ~ 1335050 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030754 lzts3a coding NC_007116.7 CM002889.2 2742232 ~ 2752573 (-)