AMCG00009838


Basic Information

Item Value
gene id AMCG00009838
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 984596 ~ 995847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009838
TCTTACTGCAGTTGAACTGAGCGGCTGCTGTGAGCTTGAAGAGGACAAGAAGACATGGGCTGTCTGGGATTTCTCTGGGCATTGTGCTTATGGACAACAGTCATAGGCCTCTTCAACCAGAATCCTGACACAATTTACGTGGAACTGAAAAAAACAGGATCATTATCCTGCAGTACCCCTGACAAGAATCCCTCAGGGGTGTACTGGTACTTTTGGAGCCGTGGCACAAATGAGCTGAAGTTCCTGTTCTACTGCACAGTGACAGGTAGATTCACATATGATGACAGCTTAACTGAAATGGACAGGTTTAAATCTAGCAAGAGGGACAGCATGGGGACCATCTTCACCCTGAAGATCACTAATGTGAAGGCTAAAGATGCTGGGATTTACTTCTGTGCCTTTTCTAATGGAACACATCTTGAAATGAAGAAAGGCATTGACCTAAGACCAGGAGAGAGGCGTCCAACTCAGCCCCCGCCCACCATACCCCCCGAGAAGCCCAAACCTTGCCGCTGCATTAACAGACCCAGCACACGGCCCAAGCAAGGGAAGACCTGTGAAGCTCAGGTACTATGGTCCTTGGTTGGAGGAGTTCTGGGCTTGACAGTAGTTTTAATCTGCACCCTGTACTATTTCAGCAGGCTGCCTAAGAAATGCCGTCACAGACTTATCAATTCAGACACTGCAGTGAGGGGATTTGGGAAGCACCTGTGCTTTAAAGGCAGCCAGGTTCCCTCTGTCTCCAGACTCTCTTCTGCACCTACACCAGGCTGTTTCAGGAGACTCAACTGACACAGAtaatggagaaagagagagcggcAGAGAGAAATTCACTAGTAGCGCAGCCTACCAAATATCCAACTCACAATTATTTAGACTTTTGCTTTTCAGGAAgtactaatatatatttcttgggaatataatgcatttgtttctgtaatttttattttacgaATATGtagatatttaacaaaatgtatactcAAAAGTTTCACATATACtggatatatatgttttcttatGCTGCAGTCTGCatgatttatatgttttattattgtcctCAAGCatttgaatgtgtaaaaagatttatgtttgtttttcaccaatttctttgcaaatatttCAGGCATTATAAAACTCACTgcttcaataaaat
>TU94559
CTAGAGCACCCCTGCAAAGTAGCCATAGAACAGACAGAATAAGGGCGAGCTGGAGCTCAGTGTTAGCACTTGCAGTACTCTTACTGCAGTTGAACTGAGCGGCTGCTGTGAGCTTGAAGAGGACAAGAAGACATGGGCTGTCTGGGATTTCTCTGGGCATTGTGCTTATGGACAACAGAGAGGCGTCCAACTCAGCCCCCGCCCACCATACCCCCCGAGAAGCCCAAACCTTGCCGCTGCATTAACAGACCCAGCACACGGCCCAAGCAAGGGAAGACCTGTGAAGCTCAGGTACTATGGTCCTTGGTTGGAGGAGTTCTGGGCTTGACAGTAGTTTTAATCTGCACCCTGTACTATTTCAGCAGGCTGCCTAAGAAATGCCGTCACAGACTTATCAAGAAACAACAGCTGCGCTGAAGTGAAGTGGCTTTGGCAAAGAACACCACAAATGTGAAGTTCCCTCTGTCTCCAGACTCTCTTCTGCACCTACACCAGGCTGTTTCAGGAGACTCAACTGACACAGAtaatggagaaagagagagcggcAGAGAGAAATTCACTAGTAGCGCAGCCTACCAAATATCCAACTCACAATTATTTAGACTTTTGCTTTTCAGGAAgtactaatatatatttcttgggaatataatgcatttgtttctgtaatttttattttacgaATATGtagatatttaacaaaatgtatactcAAAAGTTTCACATATACtggatatatatgttttcttatGCTGCAGTCTGCatgatttatatgttttattattgtcctCAAGCatttgaatgtgtaaaaagatttatgtttgtttttcaccaatttctttgcaaatatttCAGGCATTATAAAACTCACTgcttcaataaaatattaaaaagggtaa

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009838 True 1156 mRNA 0.43 7 985342 995833
TU94559 False 896 lncRNA 0.42 7 984596 995847

Neighbor

gene id symbol gene type direction distance location
AMCG00009842 NA coding upstream 10144 962006 ~ 974452 (+)
AMCG00009841 NA coding upstream 34907 949129 ~ 949689 (+)
AMCG00009843 NA coding upstream 61911 920888 ~ 922685 (+)
AMCG00009836 NA coding upstream 82264 898278 ~ 902332 (+)
AMCG00009824 NA coding upstream 98685 883413 ~ 885911 (+)
AMCG00009837 NA coding downstream 18227 1014074 ~ 1021414 (+)
AMCG00009840 NA coding downstream 201783 1197630 ~ 1223449 (+)
AMCG00009839 NA coding downstream 238909 1234756 ~ 1245100 (+)
AMCG00009845 NA coding downstream 313878 1309725 ~ 1313842 (+)
AMCG00009850 LOC107735852 coding downstream 434087 1429934 ~ 1485095 (+)
G75644 NA non-coding upstream 238524 742885 ~ 746072 (+)
G75642 NA non-coding upstream 243566 740479 ~ 741030 (+)
G75600 NA non-coding upstream 375821 586864 ~ 608775 (+)
G75572 NA non-coding upstream 664697 304793 ~ 319899 (+)
G75556 NA non-coding upstream 877551 106073 ~ 107045 (+)
G75743 NA non-coding downstream 35619 1031466 ~ 1031717 (+)
G75767 NA non-coding downstream 174859 1170706 ~ 1174954 (+)
G75817 NA non-coding downstream 402311 1398158 ~ 1399008 (+)
G75822 NA non-coding downstream 432164 1428011 ~ 1428389 (+)
G75826 NA non-coding downstream 489639 1485486 ~ 1486092 (+)
AMCG00009821 NA other upstream 107338 867680 ~ 877258 (+)
G75745 NA other downstream 41359 1037206 ~ 1037442 (+)
AMCG00009846 NA other downstream 271012 1266859 ~ 1298242 (+)
AMCG00009844 NA other downstream 326771 1322618 ~ 1327593 (+)
G75807 NA other downstream 338120 1333967 ~ 1335050 (+)
AMCG00009851 NA other downstream 364689 1360536 ~ 1368815 (+)

Expression


Co-expression Network