AMCG00009840


Basic Information

Item Value
gene id AMCG00009840
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1197630 ~ 1223449 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009840
ctgtagcctatttatatctatatttaagaggggaaaaatactgttttatttttgtattcattcatttacatatttattttccttgggaggcttttgtaaatatataaaattcaatatttttacaaTGGATATGACATGCCGTTTGATTCAGCGATCTGCTCTATTTGCTGTTTGTGCCATTCTATGTACTGTGGACATATCTGCTGGCGAGAGACAATATGTCAATGAATGGGCTGTGGAGATCCCCGGAGGTCCTGATGCAGCCAAGGAAATAGCGGAAGAATTAGACTACGAATTAGTCAGACAGATTGGGGCTCTTCAAAACCACTATTTATTTAAGCATAACAGTCATCTGACAAGGTCCAAAAGAAGTGCAGATCACATCACAAAGAGGCTGTCAGAGGACGAGAGGGTGTCATGGGCAGAGCAACAGTATGAGAAGCAGAGGAGAAAGAGAGCCCCTCTGGGGGAGTGTGTGGATTGCTCAGTTGACAAGCTGTTTGATGACCCAATGTGGAACCAACAGTGGTATCTGCAAGACACAAGGACCTCCCCGTCTCTCCCCAAACTGGACCTTCACGTCATCCCAGTATGGAAGAAGGGGATCACAGGCAAGGGTGTGGTTATCACTGTGCTGGATGACGGGTTGGAGTGGAACCACACAGACATTTATACCAACTACgaTCCGACAGCCAGCTACGATTTCAACGACAATGATCCAGACCCCTTTCCACGATACGATTCAACTAATGAGAACAAACATGGTACAAGGTGTGCGGGAGAGATAGCCATGCAGGCAGACAACAACAAGTGTGGTGTTGGAGTCGCGTACAACTCTAAAGTTGGAGGGATTCGAATGCTGGATGGGATTGTAACTGACGCTATTGAGGCCAGCTCCATTGGCTTCAACCCCGAGCATGTAGACATTTACAGTGCCAGCTGGGGACCCAATGATGATGGAAAGACGGTAGAGGGGCCCGGGCGGCTGGCTCAGAAGGCCTTCGAGTATGGTATCCAGAAGGGTCGAGGAGGGAAAGGCTCGATCTTTGTCTGGGCCTCAGGAAACGGCGGGCGGCAGGGGGACAACTGTGATTGCGATGGCTACACTGACAGCATCTTCACTATCTCCATCAGTAGTGCCTCCCAGCAGGGCCTGTCCCCCTGGTATGCAGAGAAGTGCTCCTCCACTCTGGCCACGGCCTACAGCAGCGGAGACTACACTGACCAGAGAATAacCAGTGCAGACTTGCACAACGagtgcacagagacacacactggcACCTCTGCCTCTGCCCCTCTGGCTGCTGGGATCTTCGCCTTGGCCCTTGAAGCAAACCCTGATCTTACTTGGCGTGACCTCCAGCATCTGGTAGTATGGACTTCGGAGTATGACCCATTAGCCAACAACCCGGGCTGGAAGAAGAATGGTGCTGGGCTGATGGTCAACAGCAGGTTTGGGTTTGGCCTTCTCAATGCCAAAGCTCTGGTGGATCTGGCTGACCCCAAGATCTGGAAACATGTACCTGAGAAGAAGCAGTGCATAGTGAAGGATGAGACCTTCCAACCCAGGGCTTTAAAAGCTGCTGGTGAGATCACCATTGAAATCCCCACTAAATCCTGTGCTGGACAGGAAAATGCCATTAAGTCCCTGGAGCATGTGCAAATGGAGGCCAGCATTGACTACACACGGAGGGGAGACCTGCACATTACACTCACTTCCCCCTCAGGAACAAGCACTGTCCTGCTGGctgaaagggagagagacacatcTTCTAGTGGCTTCAAGAACTGGGACTTCATGTCTGTGCACACCTGGGGGGAGGACCCTGCAGGGACATGGACACTGAAAATTACCGACTTGTCTGGCAGGATCGAGAATGAGGGTAAGATTGTGACCTGGAAGTTGATTTTGCATGGGACCTCAACAAAACCAGAGCACATGAAGAAGGCACGCATTTACACTCCATACAATGCAGTGCAGAACGACAGGAGAGGGGTGGAGAAGATGGTCGACCTGATGGAGGAAGGCCCTGCTGACACCCAACAGATCTTGAAAGCAAAATCATCTGAGAGGCCATATCCCGGGGGTCAAGTGGCAGAGAGGGCTCCTTCTGAGGCACTGATGCGGCTGCTGCAGAGCACGTTCAGCAGGCAGGTGGGGCCCAACGAGCTCAGAGCAGCCCTGCCCCCCACCACTACCCCTGCCCTGCCCCACAGCCCCAGTGACAAGCAGCATCTCCGCATCCCCTACCAGAACCTGTACCAGGCCCTGGATCAGCTGAACAAATACTCACAGCTGAAGGACTCTGAAGACAACCTGTACAGTGACTACAGCGATGTGTTCTACAATGCTAAGCCATACAGGCACAGGGACGACCGGCTGCTGCAGGCCTTCTTCGACATGCTCAATGAGAACAGCCAATAGTTGAGTGTATGGCCGGTGGGAGGTGGGGCTGGGATATGGGGGTCAACCTTTGCTCATTCCATTGTATCCATTACATTCCCTAAAACTTTGTTACATCTTATTCTGTTGCATTTGATTACATTCCTAACATAATGTTCAAATCctttgcattgcatttgattATGGATGTGTTGTGGCCAATCTCAATTAAGGAGTTAAAGTCCGGACTGGATTAAAAGTTCTTCAATGAGTCGGACTGGAAGAGCCAAGATCATAGTTCCCAGTTGTCAggcctgttgtgtttttgataGAACCTCCCATCTCTGCCAGGTCCCCCCACCTACATGCACCCCTCTTcatcctccttctcctcttcctcttctccccaaagtttattttctattaaataatGCAGCATTTCTATACCAGAAGAAATTTTGGTTTAGAGCGAACACCACTCACCATGTTTAAAGGTGGATCTGTAAACTGTTTCTTTAtagtcttatttatttgtttatttgtattagtttatttgttgttgttgttgttttgttttttcaaatcacagcaaaaaaaaaaaaaaaaaaagatcttctGCAAATTACAGCGGGAGTCGGTTTCTTACTTCCTGGTGTGAATTCAATCGTCCTTAGTCAGAGAGATTTCAAGagattgcattttaacattaaaacttTCATCATCACAAAACCAAACATGTAGAGGTCAATGAGaaaatactattaaatacaattttaatcaaTTACTTGGTTGATCTGATTAAAGTAGTTATTTATACCTTTGgcatttattcctttatttaatgtcttaCTATTTGCATATAATATGATATGGTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01359 PCSK1; proprotein convertase subtilisin/kexin type 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009840 True 3258 mRNA 0.47 14 1197630 1223449

Neighbor

gene id symbol gene type direction distance location
AMCG00009837 NA coding upstream 176216 1014074 ~ 1021414 (+)
AMCG00009842 NA coding upstream 223178 962006 ~ 974452 (+)
AMCG00009841 NA coding upstream 247941 949129 ~ 949689 (+)
AMCG00009843 NA coding upstream 274945 920888 ~ 922685 (+)
AMCG00009836 NA coding upstream 295298 898278 ~ 902332 (+)
AMCG00009839 NA coding downstream 11307 1234756 ~ 1245100 (+)
AMCG00009845 NA coding downstream 86276 1309725 ~ 1313842 (+)
AMCG00009850 LOC107735852 coding downstream 206485 1429934 ~ 1485095 (+)
AMCG00009854 NA coding downstream 287970 1511419 ~ 1511967 (+)
AMCG00009856 mctp1,LOC106580145,LOC107703246,LOC107720291,LOC107756292 coding downstream 363849 1587298 ~ 1593804 (+)
G75767 NA non-coding upstream 22676 1170706 ~ 1174954 (+)
G75743 NA non-coding upstream 165913 1031466 ~ 1031717 (+)
G75644 NA non-coding upstream 451558 742885 ~ 746072 (+)
G75642 NA non-coding upstream 456600 740479 ~ 741030 (+)
G75600 NA non-coding upstream 588855 586864 ~ 608775 (+)
G75817 NA non-coding downstream 174709 1398158 ~ 1399008 (+)
G75822 NA non-coding downstream 204562 1428011 ~ 1428389 (+)
G75826 NA non-coding downstream 262037 1485486 ~ 1486092 (+)
G75827 NA non-coding downstream 273052 1496501 ~ 1497008 (+)
G75910 NA non-coding downstream 910946 2134395 ~ 2154555 (+)
G75745 NA other upstream 160188 1037206 ~ 1037442 (+)
AMCG00009838 NA other upstream 201783 984596 ~ 995847 (+)
AMCG00009821 NA other upstream 320372 867680 ~ 877258 (+)
AMCG00009846 NA other downstream 43410 1266859 ~ 1298242 (+)
AMCG00009844 NA other downstream 99169 1322618 ~ 1327593 (+)
G75807 NA other downstream 110518 1333967 ~ 1335050 (+)
AMCG00009851 NA other downstream 137087 1360536 ~ 1368815 (+)
AMCG00009852 NA other downstream 185731 1409180 ~ 1423122 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_12380830_12394437 PCSK1 coding CI01000006 null 12380465 ~ 12394437 (-)