AMCG00009846


Basic Information

Item Value
gene id AMCG00009846
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1266859 ~ 1298242 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009846
ATGGCGGCGCTGAGTGAGGATGGAAGGTACGGGCTGTCGTGTGGGAGACGGAAAGCCAGCAGGACCACGGCTTTCCACGTCAAGTTAACCGAGACAGCATTCAGGGCGCTGGAAAACTACCAAAACTGCAAGAGGGGCCAGTTCAAGCGCATTAAAATTCCAAGAATAGATGCTCCTGCTGACCTGCGAaactttgatttttatttgtccAACGTGGGCAAAGACAACCCTCAGGGAAGTTTCGACTGCATTCACCAGTATACGTCAAGCTATGGAGTCTCTCAGCTGGACTCTCTAGGTACAGTGCAAGATAAAATCACGGTGTGTGCTACCAATGACTCCTATCAGATGACGCGCGAGAGGATGACGCAAGCTGAGGAGGAGAAGAGCAGCCGTAGGAAGAGGGTTCAGATACGGAAGCCGGCCCCCTCAGCCCCTGATCCTGTGCCCGAGAGGAAACGTTCAACACCAATTAACCCAGCCAACACCATACGCAAGTGCAATACGAACAACCCTGTGGGTCAGAAGCCGTACAGGGATAGAGTAATCCACTTACTGGCACTTAAGCCCTACAAGAAGCCAGAGGTCTTGGCTCGCTTGCAAAGGGATGGCGTTAATCAGAAGGACAGGAACTCACTGGGACCAACGCTGCAGCAGGTTGCAAATCTTAATTCAAAGGACAACTCTTACACACTGAAGGAATACATGTATAAAGAGATCCAGAAGGACTGGCCTGGCTATTCGCAAGAGGACAGGCTGCTGCTGGAGCGCATACTAGCTCGCAGCCAGTCAGAATCTCTCCTAACAAGTCCACCAAAGGAGCCCATTTCTGGATCTCCTCGGAAGCGGACTGTAGACTTTGACTTCATTGACCCTCTCATGCCCAAGAAGACCCGTATCTCGCACCTCACCAACCGTGTCCTGCCAACCCCAAATGACTACCTGCCTCTTTCTAACGAAGAGAAATCAGCCCCTCCTGCTCCACCTCCATCTGCTGCCTCTGCTGTTGCCTGCCCTTGCCCCCTGCCACTACCCCCACCAACCCATCTCCCCGTGTCCCACCCCCCTGTGCCCACCAGCTCCAATTCCAACTCCCCAAGCACACCAGAGGGCCGTGGCACGCAGGACTTGCCCGGGGATGGCTTTAGCCGCAACCAGATCTCTTTGGAGGACCAGCCGGAGAAGTACACATCTCGGACTGCATCGGAGGTTCCCGTCCCTGCCTCTGACTGCACCAAGCAGACTCCCCCCTTGGTGTTGGGCTATGGCCCCAAGAGCAGCAAGAAAcccaaaaataaatccaaaaaaCACAAGGAGAAGGAGCGGGAGGACCGGCACGAGGCTGAACAGGTTGAGGAAATCCCTAGGAAAAAGCAGCGTCTGGAGAGTGGTGGAGGCACACCCAGGATACAGAAAACGCCGAGCTCTGACAAAGAA
>TU94640
CTGGGGATGGCCGGGGGGAGGCGAAGATGGCGGCGCTGAGTGAGGATGGAAGGTACGGGCTGTCGTGTGGGAGACGGAAAGCCAGCAGGACCACGGCTTTCCACGTCAAGTTAACCGAGACAGCATTCAGGGCGCTGGAAAACTACCAAAACTGCAAGgCAGAGGATCAGACCTGGCACCTCCAACACTGCTCGCCTGTACAAGAACTGCGGTCCTAAGATGGAACTCAACGCTGAACCACAGCCCTGCCCCGGGCACAGTGTACTAATATACTATTGACACCAGTCAGCAATAGgctacatacagtgcatccggaaagtattcacagtgcttcactttttccacattttgttatgttacagccttattccaaaatggattaaattcattatcttcctcaaaattctacaaacaatactccATAATGACAAgacgtttgtttgaaatctttgcaaatgtattaaaaataaaaaaataaaaaagcacatgtacataagtaacGCACAGTTATGTTTCCGAATGTAGGgcggcagtctgagtgtggtgTGGACAGGAAAAGTCAGTCGTTTACTCAAATAGACTGTCTAAATTAGCTAGCTTGATAGCTcttatacatattgtatttcgctgttgtgactggaaaacattgccacaaggatgctaatgtaatgcattttcattgcagttcacattgctaaactggcaattgaatgaaaatgtttaaaaaagaaaaacatattggtcggtcaacagctgtaattgcataatattcc
>TU94641
CTGGGGATGGCCGGGGGGAGGCGAAGATGGCGGCGCTGAGTGAGGATGGAAGGTACGGGCTGTCGTGTGGGAGACGGAAAGCCAGCAGGACCACGGCTTTCCACGTCAAGTTAACCGAGACAGCATTCAGGGCGCTGGAAAACTACCAAAACTGCAAGatttGCACTGAGCTCTCGCCTGTCCTGgccggctcagcaagtttctaactttccatGGAATTCAGTCAAACCCGGGATCCGGATCAAAGCCTTGATCAGCCATTGATCATGATAATGAAATAACGCGGTGTGGTCTGCTGTGGCGCACAGAGCGCGtctgccatttcaaagcgcttcacTTTGCACAAGATGTGATGTCTTAGTTTTATGCTTTTGTATAattggttatttgttttataaatgtataaatctgATTAGATCTGTGCATACCGATGTATACAccacttttaattttcacttaagTTTTAACcaagtctttatttttcctcacACAGCCGTTTCATAGCAGCCGCGCATTGTTCGGGCTCTGCGGTTGTGTGTGGTGTGAAATGTCGGCGATTCTAGTGTTTAGTAAAGAAAACTGACACAGCTACAGTGACTAGTGCATGTTTTGGTTGCAGTTGCCTTTATTCATGATCGCAATTttctggaaaacacaaaagaagtaaatgaaaatgccttacCATATTGCTCTTCACTGATCCTGTCTTCTGAGAAATTGCAGAGTGCATGGGGTCTTCACAGCCACCACAGACTCCATGTTTAAACAAGAGTGAACTCCCGC

Function

GO: NA

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009846 True 1437 mRNA 0.54 8 1266885 1298242
TU94640 False 773 lncRNA 0.43 2 1266859 1280227
TU94641 False 783 lncRNA 0.46 2 1266859 1273549

Neighbor

gene id symbol gene type direction distance location
AMCG00009839 NA coding upstream 21759 1234756 ~ 1245100 (+)
AMCG00009840 NA coding upstream 43410 1197630 ~ 1223449 (+)
AMCG00009837 NA coding upstream 245445 1014074 ~ 1021414 (+)
AMCG00009842 NA coding upstream 292407 962006 ~ 974452 (+)
AMCG00009841 NA coding upstream 317170 949129 ~ 949689 (+)
AMCG00009845 NA coding downstream 11483 1309725 ~ 1313842 (+)
AMCG00009850 LOC107735852 coding downstream 131692 1429934 ~ 1485095 (+)
AMCG00009854 NA coding downstream 213177 1511419 ~ 1511967 (+)
AMCG00009856 mctp1,LOC106580145,LOC107703246,LOC107720291,LOC107756292 coding downstream 289056 1587298 ~ 1593804 (+)
AMCG00009855 mctp1 coding downstream 400253 1698495 ~ 1715753 (+)
G75767 NA non-coding upstream 91905 1170706 ~ 1174954 (+)
G75743 NA non-coding upstream 235142 1031466 ~ 1031717 (+)
G75644 NA non-coding upstream 520787 742885 ~ 746072 (+)
G75642 NA non-coding upstream 525829 740479 ~ 741030 (+)
G75600 NA non-coding upstream 658084 586864 ~ 608775 (+)
G75817 NA non-coding downstream 99916 1398158 ~ 1399008 (+)
G75822 NA non-coding downstream 129769 1428011 ~ 1428389 (+)
G75826 NA non-coding downstream 187244 1485486 ~ 1486092 (+)
G75827 NA non-coding downstream 198259 1496501 ~ 1497008 (+)
G75910 NA non-coding downstream 836153 2134395 ~ 2154555 (+)
G75745 NA other upstream 229417 1037206 ~ 1037442 (+)
AMCG00009838 NA other upstream 271012 984596 ~ 995847 (+)
AMCG00009821 NA other upstream 389601 867680 ~ 877258 (+)
AMCG00009844 NA other downstream 24376 1322618 ~ 1327593 (+)
G75807 NA other downstream 35725 1333967 ~ 1335050 (+)
AMCG00009851 NA other downstream 62294 1360536 ~ 1368815 (+)
AMCG00009852 NA other downstream 110938 1409180 ~ 1423122 (+)
AMCG00009863 NA other downstream 1454018 2752260 ~ 2768508 (+)

Expression


Co-expression Network