AMCG00009850 (LOC107735852)


Basic Information

Item Value
gene id AMCG00009850
gene name LOC107735852
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1429934 ~ 1485095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009850
CACCTTATTCCCGGGGTCAATGGTCAGGCGGCCATCCTCGTTGGATGCTGGGATTGAACTATTCCAGTTCAGACTgaagtaataaaataacagAAACCATGTCAAACAAAGAGGTGAAGTCTGCTTTGAAAAGTGCCAGGGaagccattaaaaacaaagaattcAAAGAAGCCCTAAAGCACTGCAAGGGTGTTTTGAAGCTTGAGAAGAACAACTACAATGCCTGGGTGTTTATCGGCGTGGCTGCAGCTGAGTTGGAGCAGCCAGAACAGTCACAGATTGCATACAAGAAGGCTACAGAGCTGGAGCCAGAGCAGTTGCTGGCATGGCAGGGGCTAGCAAACCTATATGAAAAAAGTAACAAGATGGATTTTAAAGCTGACTTGCAAAGGGTCTTCCAGAAACTTCTAACTCTGTACGAAAGTTCAGACAAATCAAAATGGTATGAGGTGGGCAGGAAGCTGGTGGAAATCTACCATAAGGAGAAGAATCACTTGGAGGTGGGCCGGGTGTGGCACAGACTGGTGCGCCTCAaggtggaggagggggtggaggtgCAGGAACTGAGGCAGTTGTGGGTTCGGCTGACCCAGCTGCTGAAAGACAGCGTGGAAGAGCAGGACAATGAAACACAGCAGCTGCTGATCATAGCTTTTGAAAATGCCATGAGTTTGATGAACAAGATTCCAAGTGAAGACCAtcaaaagctttcaaatgaatacattcaatgCTTATCAAGACTGCCCCATGAACAGATGAAGATGAGAGAGTCATGCAAGACTATGCAGTCTCTCTACCCAACCCTGATGTTTCCCCTAGAGATCCTCAGCCTGCATTTCATCCATACAGGTGTGTACAGTGAAGAGGCTTTGCAGTGTTTCACTAGATTAGTGGAGATGGACTCGAGCAGTGGCCCTGGACATGTTGGACTGGGGATCATAGCTTTCCAAGAGAAGAAATATGATGAGGCTGTCAAGAGTCTATCCCAGGGACTTAAACAGATTCGCACCAGTGCAAGTGGGTGGTATCACTTAGCACAAGCCCAGTTGAAAATGCACCAGTATCACAACTGCATTGTTTCCTGCATCCAAGAGGAGCAGTGGAAACAGAGGTTGCTGCGAATTAGGGTAGAAGCCCTGGTGAAGAGTGGGGGGGGATCCTGTGCAGAGGAGGCCTTGGACACCCTCTCACAGcTTTCTGATGCTGATAATGACCCTGTCCTGTTGGTTCTGAAGGGAACTATTTACCTGCAAAAAGGGCTTCTGGACCAGGCATATCAGGTGGCCACTGATCTTCTGGACTCGCACCCCCAGCTGGCAGAGGCCCACGCTCTGAAAGGCCACATCCACCTGGCCCAGGATCAGCACATACAGGCAGAGCAGAGCTTTCAGAAGGCGGTGGATAATGACCCATCCTCAGGGGAGTACTACTTCAACCTGGGGCAGCTGTACTGGAACATGGGGGAGGAGACCAGGCGGGACAAGAGCAAGGCACATACACACTTACTAAAGGCCGCCAAGCTGGACTCGAATCTTGGGCCTGTGTTCCGGGTGCTGGGATGTTTCTACAGAGAGGTGGTGCAAGAGCAAGGGCGAGCACGCGGCTGTTTTAAGAAGGCCTTTGATCTGGACAGCAGTGACACCGAGGCTGGGTCTGCAGCTGTTGACCTAAGCATGGAGCTTGGAGACATGGATTCTGCACTGACAATCCTGAGATCAGTGACAGAGCAGGCGAGTGCGGGTTCGGCAAAGTGGGCATGGCTCAGGAGAGGCCTATATTACCTGAAGATCAACCAGCACTCCCAGGCCATTGCAGATCTGCAGGCAGCGCTGAGGGCAGACCCAAAGGATTCGATCTGTTGGGAGTGCCTGGGAGAGGCCTACCTCAACAGGCGCAGTTTTACAGCAGCACTCAAGGCTTTCAGCAAAGCTAACTACCTAAACCCCCAGTCCATCTACAACCTTTACCAAATAGCAGCTATTAAGCAGACCCTGGGCAAATGCAAGGAGGCcacaaatgaatacatgcaAATCATCCAAAGGGAGGAATATGTGCCAGCACTTAaggGTCTAGGTGAGTGCTATCTTTCTATGGCCCAAAGTGCAATGAAGGATTACCTGGATGGAAGAGCGATGGACTTTATTGAAAAAGCCATCAAGTATCTCTTCAGAGCTGTGCAGTGCCGACCAGACCTGTCTTGCTTGTGGAAGCTGCTTGGGGATGTCTGCACTTCCATCCACTCTTTGGCCCCAGCCAGGGCCCAGGCCAGTGTGCCAGGCCTCCTCTGTGGACACAGCTCCAGTCCTAGAGAGACCCTACCGAAAGCTGACATCCTCCGGCTTGGGAGcagGTGCTACGCTCAAGCTCTTAAGCTGATGGCAGATTGTGCCAATTTGTGGAGTGATCTTGGACTAAACTATTACCATCAGGCCCAGCATTTGACAGCAGTGCacagtgagagtgagtgtgcaGAGCTCTTTGAGAAATCTTTGCAGtgTGTCAAAAAAGCTGTGATGCTGGACAGCAGAAACTATTTCTACTGGAATGTGCTGGGAGTGGTTGCCATGAGTAAAGgtatTGAAAACCTGGCCCTTGCCCAACACTCATTTATTAAATCAGTGAACATGGATGCAAATAATGTAGTAGCCTGGACTAACCTTGGGGTGTtgtatctgaaaaaagaaaacattgagCTCGCTCATGAAGCCTTCAAGGTGGCCCAGTCTCTTGAGCCTTTGTATGTAAATTGCTGGATTGGACAGgCTCTTATTGCAGAGTCTGTTGGGAGCTATGAAACAATGGATCTTTTCAGACACACTACAGAGCTGAGCACCCATATTGAAGGTGTGAATGGTTATGCCTACTGGGTGTGCTCTACACTGCTGGACAAGTCCAATAGGGATTCGGAGCTCTATCGCTACAACATCGTCCAGATGAATGCCATCTCGGCAGCCCAGGTCGCTCTGTGCAAATATACAGAGAGGGTTCAGACTGATGCTGCTGCTTTCTCCATGCTTGGGTACCTTAATGAACATCTACACCTGAAGTTACAGGCCACACAGGCCTACCAGAGCAATACAGGTCAGTATGAGAAAGCAGTCAAGGCCTACTCCTCCATACCACTGACTGATCTGCATGACCTCACTGGGCTGGCACTGGCGTActtcaggagcagtcgcttacAGGACAGCATCTTGGCATATGAGAAAGCCCTGAAAGTCGCGTCCAGTGAGAAGGAGAAGGCGTACATCCTGACTGCCCTGGCTCTGCTGCAACACCGGCAGAACAATATGGACAGCGCCAAGACCCTGCTCTTCAAATGCTCTGTGCTGAAGGAGCCCTGCACAGAGAgcctgctgtgtctgtgtgccctGGGCCTGGTCCACAGAGATGCAACCCTAGCCGCTGCTGCCCTGAATGAGCTCCTGAAGCACAGTGCTGACTGCGAGGCCACAGAGGAGGAGCGCTGCCTGCTGACCTGCAGCGTGCTCGCCCTGCAGGGGAACAACAGCGCCGTGCAGAGACAGGCTGCCAAGGCCGTGCACAGTAATCCTGGAAATGCTGGCCTGTGGGCTCTTCTGTCTAGAGTGGTGCCTCAGTACAACCCAAGAAATGCCAGAAAGGCGCTGTTGTACAGTGGTGTGAACCAGCTGGCATCTGGCTGGCACTCTGGGGAGGATGATGACCCTGGAGTCTGGGCTGCCCTACTATCGGCATGTCACACAGAGAACACAGCCAGCTGCCTGAGGGATGCGTCTCGTGGCAGGAGGCAATTGGAGGGGGTACTGACTCAGCTTGTGTCTGAAAAGGTGCGGACTGCAGGGAGCGATATGAGGCCTAAGTTATCTGCCCTGAAAACGTGGTGTGTAGAGCAGGCTGTATGGGGGCTGAAACAGGCCGGACTTCACACTGATGCAGAGGCGGTCTGCACCAAGGCCCTCAGCAGTGACCCTGAGCAGCCTGGGCTTGTACTGCTGCAGCGGCAGGTGCAATGTGAGGCGCTCCTGCTGTCCTGCACCCAACTGCCCGATGCTGTGCTGGAGGAGCTGCGCAAAGCCGTGCTGGCCAACTATACCTCTATGCCCGCCTGGCATTGGCTGGCGGAGGTGTACCGGTCGCAGGGCTTACTGGTGGGAGCAGTGATGTGCTACAGGCAGAGTTTGCAAGTGGCGTCTCAGCAGGGAAACTTCAGCGGAAAACTGGCCAGTCTGCTCCGCCTGGCCCTGCTGGCCCTGGCACCCTGCATGgCGAATGTCTCCAACAATGAGTGGAAAGACTTAGTCAAAGAAGCTACCAGTGAAGCCCTGAAGCTAGCTTTCTCTCCCCTAGCCCTGCTGATCCAGGCTCTGCTGCAGTTCTCCATTAAGATGGGGGCCAGAGAAACTCGTCGTCTGCTGGAGAAGGTGGTCTACACAACTGGGTTCCCTGAGTCAATCACATCCGTCGCTCGCTGGTACCTCCTCAGACATCTGCATTCAAAGAATGACCAGGAGCTCATTGATacgTTAATGGATCACGCCAGAGCTGCAGGAGATTCCAGACTAGAGAAACTTTACAACCAGCTGTGCCCATAatcctaaaaacaaaactgcacttTCCATCGTTACAGGAAAATGTGCACTGGAGCTTTTTCAGCAAAGACCGGAAACCTGGTATTCAGTAATCTGAATGTTGGcttgcattaaaacaacattctGGATGTATTAAACAAACTTTCAACTTACAGTTGTCCTGCATAACAAATCAACTAAAGAAGTGAAAATAATGGGAAGTAAAATTGCTAGATAATTGCTAGAAGGTATCCATACATGCACAAAAATTACATGCAATAGCTTTTGGAGGTGTATTCCTATACTAAGTCTTAGCATTTTGCCTGTAACTACCCAAGTTCTGGTGAGTGTCAGGGAAAGGAATTGGTTACCGTTCCTCAACTATCATGTTTTCCACTTCTGTAAAATACTAagtaataatttgattttgGATTATAGGTTTGTAATCACTGTTAGCAGTTATTCTCAAGATGCTGTCTTACTCTGGTTGCACTTAAACATAGCACTGCGCTTTCTGCTACATGTTAAAGAGCTTTTGTGTGTCTGGGAATTAAAAGTGAATGTGATTTTCCCTtgttcataaaatgaaaataaccaaaaataaataattaagaatggAC

Function

NR:

description
PREDICTED: tetratricopeptide repeat protein 37-like, partial

GO: NA

KEGG:

id description
K12600 SKI3, TTC37; superkiller protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009850 True 5170 mRNA 0.50 40 1429934 1485095

Neighbor

gene id symbol gene type direction distance location
AMCG00009845 NA coding upstream 116092 1309725 ~ 1313842 (+)
AMCG00009839 NA coding upstream 184834 1234756 ~ 1245100 (+)
AMCG00009840 NA coding upstream 206485 1197630 ~ 1223449 (+)
AMCG00009837 NA coding upstream 408520 1014074 ~ 1021414 (+)
AMCG00009842 NA coding upstream 455482 962006 ~ 974452 (+)
AMCG00009854 NA coding downstream 26324 1511419 ~ 1511967 (+)
AMCG00009856 mctp1,LOC106580145,LOC107703246,LOC107720291,LOC107756292 coding downstream 102203 1587298 ~ 1593804 (+)
AMCG00009855 mctp1 coding downstream 213400 1698495 ~ 1715753 (+)
AMCG00009858 NA coding downstream 300418 1785513 ~ 1809475 (+)
AMCG00009860 NA coding downstream 327912 1813007 ~ 1825729 (+)
G75822 NA non-coding upstream 1545 1428011 ~ 1428389 (+)
G75817 NA non-coding upstream 30926 1398158 ~ 1399008 (+)
G75767 NA non-coding upstream 254980 1170706 ~ 1174954 (+)
G75743 NA non-coding upstream 398217 1031466 ~ 1031717 (+)
G75644 NA non-coding upstream 683862 742885 ~ 746072 (+)
G75826 NA non-coding downstream 391 1485486 ~ 1486092 (+)
G75827 NA non-coding downstream 11406 1496501 ~ 1497008 (+)
G75910 NA non-coding downstream 649300 2134395 ~ 2154555 (+)
G75914 nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC106580150,LOC106585791 non-coding downstream 699284 2184379 ~ 2203222 (+)
G75957 NA non-coding downstream 896762 2381857 ~ 2386735 (+)
AMCG00009852 NA other upstream 6812 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 61119 1360536 ~ 1368815 (+)
G75807 NA other upstream 94884 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 102341 1322618 ~ 1327593 (+)
AMCG00009846 NA other upstream 131692 1266859 ~ 1298242 (+)
AMCG00009863 NA other downstream 1267165 2752260 ~ 2768508 (+)
AMCG00009898 tmem167a other downstream 3425875 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 3747537 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 4281242 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 4574147 6059242 ~ 6085806 (+)

Expression


Co-expression Network