AMCG00009855 (mctp1)


Basic Information

Item Value
gene id AMCG00009855
gene name mctp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1698495 ~ 1715753 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009855
GATGCCTCAGGACTCGGAGAGAAAGGGCTTCATGGACAAACTGTATGCCATTCAGGATGTGTGCATCAGTGTGCAGAATGCTCTGGATGAAGTGGCCTCATACGGGGAAAGGATAAAGAATACTTTCAACTGGACTGTGCCTTTCCTGAGCTGGCTGGCCATCGTTGCTCTTTGTGTCGCCACTGTCGCCATCTACTTCATCCCTCTGAGATACATCGTGTTGGCATGGGGTGTTAATAAATTCACAAAGAAACTTCGCGACCCATATACAATTGATAACAACGAGCTGCTGGACTTTCTCTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTACCAAGAGCTGAAACCAGACCCTGGTCCAAGCCCAagtaaaaggaagaaaaacaatcctgGGTAGCCACTTCCCCGTCCGAGGAGCCGTCCCCTCGCAGCATGGACAATATGAAAGAGACGTTCTGGATCAGCTCACCattctgtctttcttcttcaattgggttttatttattttctttgtaaatgaTGTACAGACATAGAAAGTGTAATtatcactgtatttatttattttttgtccaaGGACAGGAGAAAGGAAATGGTAGTTGCAAAGTGCAAGCTAATGAAGTTaatgtgtttgatttaaacTAATTAGCCCTGTTTAAATAACTAGGTATCGAGCTGAAAGGCATCAGGCAGCCCAGTAACCATTACTATGttttcattacattgttttaaaataaacgtcTCAATCTAAATCATTCTACTGCGCATGCTCACAGTTAAAGACCACCTTGGGTGCCTGCATACTCCCCTGTAGCAAAAATGATTCCATGACATAATTGCTggtctttttattgttttaaatacttgatcatttttatttcctaaaCATTTAGCAAGGACCTAAATGTGTAATGTagtcacattaaaaaacaaacaaacaaaaaaaaaccatgaaaataaaagctgaaTCTAAATCTCATCTAAAGAATAATTTTAGTCCActgacatatttgttttttgttacattgttttatggCAGCTACTCACACAATTTGCATGGAAGTTCTGGAGCTTGTGAATGATTTTCCTCAGTCTATTCCATCTTATTTTTTAGATTTAGCTTGCAGGAACTTCAGATAACCTGGGAATGAAATGCATGTGAACACCTATTGGAATTCAGGCGCAAAAGGCTTTTGACATCAATATTTGTCATTACATTGTATACACTGCAATGATGACAACTGTTTCTTCAGTCAGGATAAATAGTCACTATCAGCTAAAGTCTCTTTGATATTTTTCTCCCACACCccaataataaaagcaaacaaaacatttgttaatttatcaaaTGAAAGCTAGATCGATTGCAGTACCACAGAGCTAATGCAGGTGTCATCAAATAACACATCTGTACAGAATAAGCCATGCTAAAAATAATCAAGGGTTTTGAGAAGAATGCAGtaatctgattttttttaaaggcaggtTTGTTTGGCTTCATTTTGCCATTCTTCTTTGTTCCTGCTGCTAGTGGGAGCCATCTCCTGCCTTGGGCTAGCAGCGTCCCAGTGTGCTCCACCTCACGGGCTGAATACTCACctttgatttgtgtttgaaGGCATaatctgtattgtgtgtgtaccCTGTTAGCAGCCAGGCTGTTTACTTCAGATTCTTTGTTATGCAAAACAGAGCTATGTTTAAGTCGAGTGTGTGAACATAAATCTGGTCTCGGTGTTATGTGCACCACACTTTAATGCGACACAAGTGTGACAGGAGGCTGATGAGACAAGTTGGCAAGCTTGGCAGGGCAAGTTTTTGTTCTTAGAGGTAACAAAAGCACAGGCTTGTGGCTTTTGCATTTCCATCTCTGCTTACTTCTTTTATCTTCTAACATTGTACAAATTCAAGACACTGTGCAGGACCCAGGGGTGTGCAGAGAGCATCCACTTGACAAACATATCCTAAACTATGAtccatatatatgtacaaaataaatccaatgtATAAAGGTTAACTTAGCCACTTTATGAGGAATTAGCATCCCTACCTTCACAGTGAAGGAATCATTCTGAAAACCCAGATTTACTTCCAAGGACCAGTATCCCATAGTAgcattcaaaaatatgtttaagaaTTCAATCCAGTCAAATAAGAGATTTAAGTatggattttgtattattttcatattgcttctttttatttatttttttttatttatagatatatatgtaacCAATAGTATTAGTGGAACTTTTAAAGAGTGTGTCTTTAAAACAGTATGAGAAAACTGTACAATTCAATGTGTtgataaacaaaccaaacaaaataaattaaaagaacatcCATATGTATtctctttaaataatgtattctacAAAAAGGGACATTtatatattactatttatacTAAATGTTGACcttgcataaaacaaaacaaaaatgagacTATTATGCTCTAAAACAACATGCTAGAGTCACAAGATCTTTTGGCCAACACCAAAAGTGAGGATTTTCCTtgcaaaatcaaaaatcaaactaGAAAAACTGTTGATGGATCATGAGATTCTATGAAGTAGAATGTATCTCATCCATAATGTATGCACTTTCAATCATTCTgttagtatattttttatttttctcttttttgcgTATATATTATAAGTTTTTGTTTGCATCATCGTAAAGCAAAGTTGCCCGTTTGTTATACTGtacagatgtatttgttttcactaaAAATATCAATTCAAGCTAGCTTTGGAAGGCATGCCATCTAGTCAGTGATAGCTTCTGAATTCTCAGTATTGTCTGTGACATCGCTATCCTTACATTGCTTACAAGTTAGTTTTGAAGAAAGTTTGAAAGGATGGTTTGGAGGGGGGAGGTGGGTGGGTTGCTGTTATGAATATGTAAATCcatttaaaagaacattttaaaaaatgaaaacttttca

Function

symbol description
mctp1 Enables calcium ion binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; negative regulation of endocytosis; and negative regulation of response to oxidative stress. Is integral component of membrane.

NR:

description
PREDICTED: multiple C2 and transmembrane domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009855 True 2953 mRNA 0.36 4 1698495 1715753

Neighbor

gene id symbol gene type direction distance location
AMCG00009856 mctp1,LOC106580145,LOC107703246,LOC107720291,LOC107756292 coding upstream 104691 1587298 ~ 1593804 (+)
AMCG00009854 NA coding upstream 186528 1511419 ~ 1511967 (+)
AMCG00009850 LOC107735852 coding upstream 213400 1429934 ~ 1485095 (+)
AMCG00009845 NA coding upstream 384653 1309725 ~ 1313842 (+)
AMCG00009839 NA coding upstream 453395 1234756 ~ 1245100 (+)
AMCG00009858 NA coding downstream 69760 1785513 ~ 1809475 (+)
AMCG00009860 NA coding downstream 97254 1813007 ~ 1825729 (+)
AMCG00009859 fam172a coding downstream 262324 1978077 ~ 1981600 (+)
AMCG00009857 NA coding downstream 326802 2042555 ~ 2044464 (+)
AMCG00009864 NA coding downstream 1117901 2833654 ~ 2839040 (+)
G75827 NA non-coding upstream 201487 1496501 ~ 1497008 (+)
G75826 NA non-coding upstream 212403 1485486 ~ 1486092 (+)
G75822 NA non-coding upstream 270106 1428011 ~ 1428389 (+)
G75817 NA non-coding upstream 299487 1398158 ~ 1399008 (+)
G75767 NA non-coding upstream 523541 1170706 ~ 1174954 (+)
G75910 NA non-coding downstream 418642 2134395 ~ 2154555 (+)
G75914 nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC106580150,LOC106585791 non-coding downstream 468626 2184379 ~ 2203222 (+)
G75957 NA non-coding downstream 666104 2381857 ~ 2386735 (+)
G75964 NA non-coding downstream 779748 2495501 ~ 2495715 (+)
G76050 NA non-coding downstream 1411369 3127122 ~ 3128106 (+)
AMCG00009852 NA other upstream 275373 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 329680 1360536 ~ 1368815 (+)
G75807 NA other upstream 363445 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 370902 1322618 ~ 1327593 (+)
AMCG00009846 NA other upstream 400253 1266859 ~ 1298242 (+)
AMCG00009863 NA other downstream 1036507 2752260 ~ 2768508 (+)
AMCG00009898 tmem167a other downstream 3195217 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 3516879 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 4050584 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 4343489 6059242 ~ 6085806 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_00003341_00066948 MCTP1 coding CI01000039 null 3341 ~ 66948 (+)