AMCG00009856 (mctp1,LOC106580145,LOC107703246,LOC107720291,LOC107756292)


Basic Information

Item Value
gene id AMCG00009856
gene name mctp1,LOC106580145,LOC107703246,LOC107720291,LOC107756292
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1587298 ~ 1593804 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009856
ACAAGTGATCCTTATGTAAAGTTCAAAATCGCTGGGAAGGAAGTTTTTAGAAGCAAAACAATTCACAAAAACCTCAACCCCATCTGGGAGGAGAAAGTCAGCCTTCTTGTGGACAGCCTCAGAGAGCCCTTGTACGTAAAGGTGTTTGACTATGACTTCGGACTGCAGGATGACTTCATGGGATCTGCCTACCTGTACCTGGACGCGCTGGAGCACAAGagGACAACGGATGTGATGTTAAACCTGAAGGACCCCCAGTATCCCGACCATGACCTGGGAGCCCTGTCCCTTTCAGTCAACCTCTCCCCTAAAGAAGGAGACTTGAGGGAAGCTGTAAAAAGCAATGTTCAAAATCCATCGCTGGAGGCCTTACAGGGCAACAGTGAGTCTACCTGTAGCAAAGATGTACCTGTAGCAGAGAGTTACCTG

Function

symbol description
mctp1 Enables calcium ion binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; negative regulation of endocytosis; and negative regulation of response to oxidative stress. Is integral component of membrane.

NR:

description
PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009856 True 429 mRNA 0.48 4 1587298 1593804

Neighbor

gene id symbol gene type direction distance location
AMCG00009854 NA coding upstream 75331 1511419 ~ 1511967 (+)
AMCG00009850 LOC107735852 coding upstream 102203 1429934 ~ 1485095 (+)
AMCG00009845 NA coding upstream 273456 1309725 ~ 1313842 (+)
AMCG00009839 NA coding upstream 342198 1234756 ~ 1245100 (+)
AMCG00009840 NA coding upstream 363849 1197630 ~ 1223449 (+)
AMCG00009855 mctp1 coding downstream 104691 1698495 ~ 1715753 (+)
AMCG00009858 NA coding downstream 191709 1785513 ~ 1809475 (+)
AMCG00009860 NA coding downstream 219203 1813007 ~ 1825729 (+)
AMCG00009859 fam172a coding downstream 384273 1978077 ~ 1981600 (+)
AMCG00009857 NA coding downstream 448751 2042555 ~ 2044464 (+)
G75827 NA non-coding upstream 90290 1496501 ~ 1497008 (+)
G75826 NA non-coding upstream 101206 1485486 ~ 1486092 (+)
G75822 NA non-coding upstream 158909 1428011 ~ 1428389 (+)
G75817 NA non-coding upstream 188290 1398158 ~ 1399008 (+)
G75767 NA non-coding upstream 412344 1170706 ~ 1174954 (+)
G75910 NA non-coding downstream 540591 2134395 ~ 2154555 (+)
G75914 nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC106580150,LOC106585791 non-coding downstream 590575 2184379 ~ 2203222 (+)
G75957 NA non-coding downstream 788053 2381857 ~ 2386735 (+)
G75964 NA non-coding downstream 901697 2495501 ~ 2495715 (+)
G76050 NA non-coding downstream 1533318 3127122 ~ 3128106 (+)
AMCG00009852 NA other upstream 164176 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 218483 1360536 ~ 1368815 (+)
G75807 NA other upstream 252248 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 259705 1322618 ~ 1327593 (+)
AMCG00009846 NA other upstream 289056 1266859 ~ 1298242 (+)
AMCG00009863 NA other downstream 1158456 2752260 ~ 2768508 (+)
AMCG00009898 tmem167a other downstream 3317166 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 3638828 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 4172533 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 4465438 6059242 ~ 6085806 (+)

Expression


Co-expression Network