AMCG00009871 (cetn3,LOC106563079)


Basic Information

Item Value
gene id AMCG00009871
gene name cetn3,LOC106563079
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 3141929 ~ 3147494 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009871
GATCCTCCGTTGTTTAGTTCACACATTATTAAcgatttattataattgaatgCCTTTCTAAACACGAAGAAAGATGGTAGAGTTTGATTGTTGTTTTCGGTAggctatatttattaaaaagtatGATCGGGATCTCAAAGGTGCACGCTAGTAACCTGTCATGTTTAACAATAATatttgtaaaggaaaataatctTAACAACGGGCTTTGGTTTGTAAAATTGCAACCACAGTAAGCGGTCTGCAATCTCTGTAGCCTAAGTATATGTAGCCACATTGCAGAAACATTGATGTTAAACCAAAGGATCGTCCTGTCACACTAGGTCACTAATTACAAATCTGATTTAAACCGTATTCTTTAACTTCATAActggtcattgttttttttacatattacatatacacGTAATCTCTTTCAAATACGTTGACAACACGTATAAATGCCCCCTGCACTGATTGTTCATACttggttgtttttaatatattccgcctgaattataaataaagccCAATCTTTAAGAAAATCCTTTGTAAGAAGTCATTTGGAGAGATCAGCTGTCTGTATAAACGTGGTGGCATGTTTCAGGACCGAGCTTGCAGCTGACAAAACTAAAcggaagaaaaggagagaacTGACGGAGGAGCAGAAACAAGAAATTAAAGAGGCTTTTGAATTATTTGATActgacaaagacaaagaaattGACTATCATGAATTAAAGGTTGCAATGAGAGCTTTGGGCTTTGATGTGAAAAAagcagatgttttaaaaatacttaaagaTTATGACAGAGAAGGAACTGGAAAGATAACATTTGAAGACTTTAATGAAGTGGTGACGGACTGGATGTTGGATCGAGATCCCCAGGAGGAGATTTTGAAGGCCTTCAAACTTTTTGATGACGATGATTCTGGGAAGATTAGCCTCAGGAACCTGCGGCGAGTGGCTAGGGAACTTGGGGAAAACATGACTGATGAGGAACTGCGTGCGATGATTGATGAGTTTGACAAAGATGGAGATGGTGAAAtaAACCAGGAGGAGTTTATGTCCATCATGACGGGAGAcacctaaaatacatttttctgaacTTTATAAGACTAGCGGTGGGCCTACAAAACCAAGAGATTGTAGGTTGTTGCTGAACAAATTGTCCAATGGGTAAAGGAGCAATTTTCTTCAAGCAGATTAGTGAATAGCAGATTAAAAGTGCATACTACATCAGCATTGCAATGTTTATAAACTGTTCTTGAAGTGTTTTTCAGCATCAAACCACATGCACAAGGAAAGATAACATGTTACaaggtaaattaaaacaaatgtgcatattaatttaaactgagtaaattaaaatagatgGTATACTATTTAAATGCATAGACTATTTGGTTTGGTGCTCCCAAGACTgagtgcatttcaaaatgttcaatttttgTACGTATGCCTCCAGCGCTAGGTTCCATTTATGATATTGCACCTTGCCTGCTTTGTAAATCAGTTGATTAGGCTTAGTTTTATCtgtaaaaatgctttacattcaTTGCTTATGTAAATGTCATTTCAGTATCACAACTGCAAAAACTTAAATTTCTTGAATTAAACTGCTTTacagttaattttaaaatcagatcTGAAACTTAATTGCTACAAACATCccttatattttttcataaaaataggTCACTGACCTAAAACATTTGATATGGAGAGCAgcaaattgcattatttatttctcccaattttgaaattcaaagtttgatgcttttaaaagttgtgaatatttttttatgattctatacaatattttgtatttttgctaGGGGTTTGATGGATTGTT

Function

symbol description
cetn3 Predicted to enable calcium ion binding activity and microtubule binding activity. Predicted to be active in microtubule organizing center. Orthologous to human CETN3 (centrin 3).

NR:

description
PREDICTED: centrin-3

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16466 CETN3, CDC31; centrin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009871 True 1836 mRNA 0.35 4 3141929 3147494

Neighbor

gene id symbol gene type direction distance location
AMCG00009869 NA coding upstream 5474 3129940 ~ 3136455 (+)
AMCG00009870 NA coding upstream 18879 3119111 ~ 3123050 (+)
AMCG00009868 LOC106580165,LOC108426240,LOC103032997,LOC106585857,LOC108255838,LOC105014633 coding upstream 238853 2891893 ~ 2903076 (+)
AMCG00009866 NA coding upstream 259846 2878709 ~ 2882083 (+)
AMCG00009865 NA coding upstream 288976 2848341 ~ 2852953 (+)
AMCG00009878 NA coding downstream 334482 3481976 ~ 3482596 (+)
AMCG00009879 NA coding downstream 346875 3494369 ~ 3512331 (+)
AMCG00009880 LOC106585770 coding downstream 481395 3628889 ~ 3659237 (+)
AMCG00009881 NA coding downstream 580785 3728279 ~ 3736645 (+)
AMCG00009885 NA coding downstream 1169544 4317038 ~ 4317867 (+)
G76054 NA non-coding upstream 2036 3138953 ~ 3139893 (+)
G76052 NA non-coding upstream 12226 3129165 ~ 3129703 (+)
G76050 NA non-coding upstream 13823 3127122 ~ 3128106 (+)
G75964 NA non-coding upstream 646214 2495501 ~ 2495715 (+)
G75957 NA non-coding upstream 755194 2381857 ~ 2386735 (+)
G76077 NA non-coding downstream 273118 3420612 ~ 3420826 (+)
G76105 NA non-coding downstream 391003 3538497 ~ 3603605 (+)
G76163 NA non-coding downstream 649057 3796551 ~ 3797008 (+)
G76168 NA non-coding downstream 743667 3891161 ~ 3894819 (+)
G76186 NA non-coding downstream 1105743 4253237 ~ 4253554 (+)
AMCG00009863 NA other upstream 373421 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 1718807 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 1773114 1360536 ~ 1368815 (+)
G75807 NA other upstream 1806879 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 1814336 1322618 ~ 1327593 (+)
AMCG00009898 tmem167a other downstream 1763476 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 2085138 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 2618843 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 2911748 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 3895103 7042597 ~ 7062734 (+)

Expression


Co-expression Network