AMCG00009879


Basic Information

Item Value
gene id AMCG00009879
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 3494369 ~ 3512331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009879
ACGTTGAGAAAGAAAGGATTAAATGGCTGTGACAGTCCAGACCCAGATGCAGACGACTCAGTGGGTCACAGCCCCGAGTCTGAGGACAAGTACAGAAAAATTAACGAAGATATTGATCTTATGATCAGCAGACAGAGATTATGTGCTTTGAGCAAGAAGGAaagcaaaggctgtgaaagcCCCGATCACGACTCCTCTTACGCTCTCACCCCAcgcactgaagaaaaatacaaaaaaattaatgaaGAGTTTGATAATATGATCAAGACTCATAAAATACCAGCTGTTCCCCCTTCTAACTATGAGATGCCAGTTTCCATCCCAGTGAGCAACCCCAACAACCTGATCTACAGCCACCCAGGCAGTTCACTGGGCAACCACAACCTCCTGCCCCTGGCTCACCCCTCCCTGCAGAGGAACAGCATGTCTCCTGGGGTAACGCACCGGCCGCCCAGTGCAGGCAACGCAGGTGGCCTTCTGGGTGCAGACCTCACAACTGGTGCAGGCACCAGTGCTGGAAATGGATACGGTAATCACCGCAACTCTCCTGGTTTGCTGGTCTCACCTGGGAGCATGAACAAGAACATGCAGGCTAAGTCTCCGCCTCCCATGAACCTAGGGATGAACAACCGCAAACCTGACCTCCGTAATCAGAGAATAAATAACTCCCAGTCTGCACAATCATTGGCTACCCCAGTGGTTTCTGTAGCAACACCAACCCTGCCAGGTCAAGGAATGGGAGGATACCCATCTGCCATCTCGACAACTTACGGTACTGGTAGGTACACCTCTAATAAATTATGGAGCAGCACGCATCGAATCAGTGGGGACTGGGCCCTTGCCAGCGCCCTCCACCTGGGCTCGGTGACCGgctggcagcagcagcacctgCAGAACATGCAGCACTCTGCCCTCAGCCAGTTAGGAGACCGCACCGCCACGCCGTCGGGGTACCCCCACCAGCACTCTCGCCAAGACTCGGGGAGGTCTCCCGTTGACAGCctgagcagctgcagcagctctTATGAGGGCAGCGACCGTGAGGATCACAGGAATGAATTCCACTCGCCCCTCGGCCTCATGAGGCCCTCCCCAGACGAGAGGGAAAGCCCCTCCGTCAAGAGAGTGCGGCTCTCAGAGGGATGGGCGACATGA

Function

GO: NA

KEGG:

id description
K04454 MEF2C; MADS-box transcription enhancer factor 2C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009879 True 1155 mRNA 0.54 8 3494369 3512331

Neighbor

gene id symbol gene type direction distance location
AMCG00009878 NA coding upstream 11773 3481976 ~ 3482596 (+)
AMCG00009871 cetn3,LOC106563079 coding upstream 346875 3141929 ~ 3147494 (+)
AMCG00009869 NA coding upstream 357914 3129940 ~ 3136455 (+)
AMCG00009870 NA coding upstream 371319 3119111 ~ 3123050 (+)
AMCG00009868 LOC106580165,LOC108426240,LOC103032997,LOC106585857,LOC108255838,LOC105014633 coding upstream 591293 2891893 ~ 2903076 (+)
AMCG00009880 LOC106585770 coding downstream 116558 3628889 ~ 3659237 (+)
AMCG00009881 NA coding downstream 215948 3728279 ~ 3736645 (+)
AMCG00009885 NA coding downstream 804707 4317038 ~ 4317867 (+)
AMCG00009890 NA coding downstream 834333 4346664 ~ 4471973 (+)
AMCG00009889 NA coding downstream 962961 4475292 ~ 4476458 (+)
G76077 NA non-coding upstream 73543 3420612 ~ 3420826 (+)
G76054 NA non-coding upstream 354476 3138953 ~ 3139893 (+)
G76052 NA non-coding upstream 364666 3129165 ~ 3129703 (+)
G76050 NA non-coding upstream 366263 3127122 ~ 3128106 (+)
G75964 NA non-coding upstream 998654 2495501 ~ 2495715 (+)
G76105 NA non-coding downstream 26166 3538497 ~ 3603605 (+)
G76163 NA non-coding downstream 284220 3796551 ~ 3797008 (+)
G76168 NA non-coding downstream 378830 3891161 ~ 3894819 (+)
G76186 NA non-coding downstream 740906 4253237 ~ 4253554 (+)
G76266 NA non-coding downstream 1646057 5158388 ~ 5228786 (+)
AMCG00009863 NA other upstream 725861 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 2071247 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 2125554 1360536 ~ 1368815 (+)
G75807 NA other upstream 2159319 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 2166776 1322618 ~ 1327593 (+)
AMCG00009898 tmem167a other downstream 1398639 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 1720301 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 2254006 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 2546911 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 3530266 7042597 ~ 7062734 (+)

Expression


Co-expression Network