AMCG00009881



Basic Information


Item Value
gene id AMCG00009881
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 3728279 ~ 3736645 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00009881
cgCGTTTTTCGGGATTATACGGTAGTGTGTCGTCATCAAAAATGGAAGGACCCAAAGCTGTCTATAAGCAGTGCCTGATGAACATCTGAATATGCTTGAAAAATACCGCATCTTAagttaataattatttgtatcaaGCGAAAACTGAAACAACAAACACGTTTAAGACTTTAGCCagttttagtttctttatttaaataattataataaagcaaGTTTTAGCCTTAATAGAAGGTCACGTCGCGAAAACTAAGGGACATGTATCACAACAGCTCTCAGAGGAAGTTCTGGACGTTCCAGAATGAGGATTCTCTGGAGCGGCTGAGAACTCAAGCAAACCATTCGTTCCACTCGAAGGTCCAAGCGAGTGGGAAGTTTGTGCTGATGGAATCTGTGTTTCTGAATGCCCGGGAGGAGAACGTGCTGTTTAAGCACTATGAGAAGAGACTTCTGGATTTTTGCACCGTTTTTAAGCCAGCAATGCCAAAATCTGTTGTGggtacagcaaatatgtatttcagaaGATTTTACCTGAATAATTCATTAATGGAGTACCATCCGAGGGTTATCATGCTGACCTGCGTGTACCTGGCGTGTAAAGTGGATGAGTTCAATGTGTCGAGCTCCCAGTTTGTGGGGAACCTTCGAGAAACAACCGCCGGCCAGGAGAGGGCGCTGGAGCAGATCCTGGAGTATGAGCTGCTTCTCATTCAGCAGCTCAATTTTCATCTGACTAGGCATCCCAATCTGGAGAACCCGGAGGTCCTGAGGAAGGCGGCAGACGATTTCCTGAACCGCTCCGTCATGACGGACACCGGCCTGCTGTTCCCTCCGTCCCAGATCGCCCTGACAGCTATCCTGCACAGCGCATCCCGGGCAGGCCTCAATATGGAGAGTTATCTGACCGAATGCTTGGGAATGAAGGACAAGGAGAAGCTTTCACAGACGATAGATGCAATGAGAAGAATTAAAAATCTGATCAAGAAATATGAAGCCCCCAAAATGGAAGAGGTCAATATCCTTAAACAGAAACTGGAAAAGGTCCACAGTGAATTTGCAATGACAAACTCaaaaagaaggaaaggaTACGAGGATGATGACCATGTCGCTAAAGAGAAGCTTGTTGAGGAGGAGCAATGGACAGATGAGGAATTTATGGACTCCCTTTAAAACAAGGAACATACAGCGGCTGATGAACATGAAGACAGGGCCAAGTGTACACTACTACAGGGCTCCACAACTTTTCACATTTGCGTTTCTGTACAGTAATGCATGACCTGCATGTGTGGGAGTTTAATGAATGCTTTTATAAAGCAAAGGGGGCAAATATACAGAAAGTATATTGTTTTGACGAGTTCAACCATTCATGTACTGCTACAAACATTCTTCAATATTTTGTCAGAAACAAACTTCATAAATTGAAATATTGCTgcctaggttttttttttttattatatatattatttccaacTGTAGTTTtcaaatttttaaataaaatatttttttatacattacacATTTCTTTCCT

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0070985 transcription factor TFIIK complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06634 CCNH; cyclin H

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00009881 True 1528 mRNA 0.42 10 3728279 3736645

Neighbor


gene id symbol gene type direction distance location
AMCG00009880 LOC106585770 coding upstream 69042 3628889 ~ 3659237 (+)
AMCG00009879 NA coding upstream 215948 3494369 ~ 3512331 (+)
AMCG00009878 NA coding upstream 245683 3481976 ~ 3482596 (+)
AMCG00009871 cetn3,LOC106563079 coding upstream 580785 3141929 ~ 3147494 (+)
AMCG00009869 NA coding upstream 591824 3129940 ~ 3136455 (+)
AMCG00009885 NA coding downstream 580393 4317038 ~ 4317867 (+)
AMCG00009890 NA coding downstream 610019 4346664 ~ 4471973 (+)
AMCG00009889 NA coding downstream 738647 4475292 ~ 4476458 (+)
AMCG00009891 NA coding downstream 740976 4477621 ~ 4478723 (+)
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding downstream 963037 4699682 ~ 4716944 (+)
G76105 NA non-coding upstream 124674 3538497 ~ 3603605 (+)
G76077 NA non-coding upstream 307453 3420612 ~ 3420826 (+)
G76054 NA non-coding upstream 588386 3138953 ~ 3139893 (+)
G76052 NA non-coding upstream 598576 3129165 ~ 3129703 (+)
G76050 NA non-coding upstream 600173 3127122 ~ 3128106 (+)
G76163 NA non-coding downstream 59906 3796551 ~ 3797008 (+)
G76168 NA non-coding downstream 154516 3891161 ~ 3894819 (+)
G76186 NA non-coding downstream 516592 4253237 ~ 4253554 (+)
G76266 NA non-coding downstream 1421743 5158388 ~ 5228786 (+)
G76346 NA non-coding downstream 1725878 5462523 ~ 5462811 (+)
AMCG00009863 NA other upstream 959771 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 2305157 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 2359464 1360536 ~ 1368815 (+)
G75807 NA other upstream 2393229 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 2400686 1322618 ~ 1327593 (+)
AMCG00009898 tmem167a other downstream 1174325 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 1495987 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 2029692 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 2322597 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 3305952 7042597 ~ 7062734 (+)

Expression



Co-expression Network