AMCG00009888 (hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619)


Basic Information

Item Value
gene id AMCG00009888
gene name hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 4699682 ~ 4716944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009888
tttgcagtgAAGAAGACCCTTGGTGCTAAAATGAACTCCCTGCTTTTGTTAGCTTTGGTTTCCCTCTGCCTGGCTGATAGCTTTGATCAACAATTCTCAAACCTGGTGAATTACAGAACCATCTACATATCAGAAAATGGGCCTCGCCTGTCAGTGGTGACAGAGCAATCCAAAGTCATCTCTCATCGTGGTGGCAATGTCACCCTGCCTTGCAAGTTCTTCCGTGATTCCCAAGCGGCCCCCAACCCTAACCAAAAGATGAGGATCAAATGGACTAAGCTCACATCAGATTACCTCAAGGAGATCGATGTCTTTGTTTCCATGGGATACCACAAAAAGAGTTATGGCAGTTACCATGGCAGGGTGTTTCTCCAGCAGGCCAGTGACAATGACGCCTCCCTCGTCATCACTGACGTCACATTGGATGACTATGGGAAGTACAAGTGTGAAATCATAGATGGCCTCGAAGATGATACGGGTGTCGTAGCACTGGATCTGGAAGGAGTCgtgtttcccttttttctccGCATCGGGCGCTACAACCTGAACTTCGCTGATGCCGAGAAGGCTTGCTTGGATCAAGATGCCCGAGTGGCCTCCTTTGACCAGCTCTATGACGCATGGAGATCGGGCTTGGACTGGTGCAATGCAGGCTGGCTCAGTGATGGGTCTGTGCAGTACCCCATCACCCAACCCCGAGAACCCTGCGGAGGCAAAGATACGGTTCCCGGTGTGAGGAACTACGGCTTTCGCGATAGAGAGAAGAGCCGATATGATGTGTTCTGCTTTACATCAAACTACAAAGGCCGTTTTTATTACTTAATACACCCAACCAAGTTCACCTATGATGAGGCCGTCCAGGCGTGCCAGAAGGATGGATCTGAGATTGCTAAAGTTGGCCAGATGTATGCCGCATGGAAACTGATGGGATACGACCGCTGCGATGGAGGCTGGCTTGCTGACGGCAGTGTCCGGTACCCCATCTCCAGGCCTCGCCGACGCTGCAGTCCCACCGAGGCAGCTGTGCGCTTTGTGGGCTTCCCCGACAAGAAACACAAGCTCTATGGCGTTTACTGCTTCAGAGCTTACAACTGAGAATTAATCTGAAAACCGattcatttacaaaacacatgtGGGACTTTCTCTTAACTAGTACGAACTCATAAAGTTACCAAAACTGtgataacctttttttttattactgtaagagaaaaataaaccattttcatacaataacaaacaaacaaacaaacaaaaaacatttgatttattatttgtttgtcataatgtttatgttttgtaaactttaccaacattatttcatttttaatcattctcagatattttaaattaatataattctggagctctatatataaaaaatgcattatagtagaaaataaaaaataaaaaaactatataaaaactaaaaaaaaagatgagttTCATCATCCCAACAAAGATATACTTCCATTAATCAGAGGGGCATGCAGTTGCTGGGATCGCTAAAACAGTAAAGCTTCTCAAATAGGAAACTGATATTTTTTAAGGCGCTTAACCCTATTCAATGTAAAACTGCAGCATTAAGAGATTGAACTATCAGCTTATGATAAACGTAGTGCTATCTGAATACTTTTTATTACTGTCTTGTGGCCTGCATTAGCAATATCACTTAAAACTGCTGATGTGAATTACTGTTTTCATtctgtgttgctttttaaatggaaaaaattcAAAGGGCTTTATGAGTTACTTAGCGCAGATACTTTTCCCCCATATTTTagagaaactatatatatatatatatatatatatataattctaatgGGAGTAACGATAGCTACTCTTTTCATCAATTTGCTATTCGAGGTGCTAAACTACATACTAACCCCCCAGAATTTCCTGTATTACACAGAACTTAATTCTTAGGGACCAAACTGCCATCACCAAACTTACATCAAACAGattttggaggaaaaaaacaatcctaCATTATATATTGCTGTGATACAaatatgtgaaatgtatatggtttacacaaaaatagaaatattataTCACATGAATCTGTCAAATTCGGATGACAGTGGcagtacttttttttctgatacttgatgtttgtttgttttttatgttcagGTGAGGTCTTTCCCAGGTGTTAGGATGTGTTTGGTGCTCAGACGAATATTGGCCCTGAAATTGCTACAATAAATTGATTGTTTTAGTTTGAGAGGGAAGGGAAAAGGTGGTTAACCTGCCAACAGGGAGTATAGTGTCAATACCACCTGTGTTTGGAATGGTACTGTTACacaatgggaaagaaaaaatattattcagagctgatcttcattttaaacaccaGCAGCTGTGTAAAGAACTGGAACTAACTGTATATAGTCAATCTCTACAAAATGCTGctgatcaaatatttaaagacacCTATTGACTGAACAACAGAGTGGATACACGAAAAATGCatacactgaaaatatataacccTCATTCAGCAGAAAATCAAgctcaaaagcaaaacacagtcTTATAACTGATCTCCTGGTAAAGCCTGAAAAGTATCCAGTTACCTTAGAGTAGCTTTTCTGTGATTATTTAAAACTTATcacaaaaaaaggtaaaatatataataataattatattaataatagcattTGTTACGCAGCATCATCTACTCAGGGCAGTTACCACAAAGAACTGCTGGACAGAGAAAGTGTAAAATTAAGCAGCTTGGTTTTTAAGTTAGCCTTAAAAACTTGATAATCTTACCAAATATGTAACTATagtatttaatgtttctttgcATCAGAATACTGTGAAGGTCACAGATTGGGAGATAAGGGCATGATCAAATAGCAATGCTCTCTGATGATTTTAGAACAATAGCCACTAAACTAGACATTAGGACATTATATTAACCAGAACAGGAACCTAGTAGCCAAATGACATTGCTGGCAATATCATGCATAATTATTGATAGGCATATtcatattgctttgttttgctgGTTTTGCTGTGGCAACTATACAGACAGTTAACTGGTTAATTGGCTAATAGGTACAGAAATCCCAAgtacaggaaataaaatgtcaagTCATGGTCAAATTTGAAAACTGTGATCTAAGCTACATCAGATGTCAAACATAAGTTTCCCTATTTGGTTTGTGTACATAAAACCATTACTCTATGGAAGTATTGTttgtatctatatttaaaatactttttgacCCAAATtcccaaaagaaaataaaaagttcgAAAAGAGAaagctttatgtttttttgtttgttttagtctttTCCCCCAGATGCATAATATTCAGAAATTATAGcctatacttttgttttcttgcaatcTTGGACAAATGTTTGCACACCCTTAGAAGAAGAGGTGTGCAAATGTTCTCTTCTTCTCATAGGAAACTATTAAATACTTTGTTAGGTTTAAATTGAGTTGTTTTCCTGtctatttgtttggtttgtttgtttatttgctttttagtttttctgagTGTGCAAACTGTTGTCCTTGAGTGTATTTATGAATGAATGTGGGTTCGAGAGAGAACAactacagctctgaaaaaaatttaaaagttcagaaatcaatgttaagttgtctcttaattatttccagagctgtatattaagctaaaattaaaaaagtagaTTAAATCCATTTGCTTTTGCAAATCAAAGGGGCATTGAGTTTTACCATAATTTACTGTGATAGTCTTTCACAACTATTTTCAAGACCTTCTTTGCTGAGAACtaaaaaaat

Function

symbol description
hapln1b Predicted to enable hyaluronic acid binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in blood island; cardiovascular system; hypochord; and mesoderm. Orthologous to human HAPLN1 (hyaluronan and proteoglycan link protein 1).

NR:

description
PREDICTED: hyaluronan and proteoglycan link protein 1-like

GO: NA

KEGG:

id description
K06848 HAPLN1, CRTL1; hyaluronan and proteoglycan link protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009888 True 3792 mRNA 0.37 4 4699682 4716944

Neighbor

gene id symbol gene type direction distance location
AMCG00009891 NA coding upstream 220959 4477621 ~ 4478723 (+)
AMCG00009889 NA coding upstream 223224 4475292 ~ 4476458 (+)
AMCG00009890 NA coding upstream 227709 4346664 ~ 4471973 (+)
AMCG00009885 NA coding upstream 381815 4317038 ~ 4317867 (+)
AMCG00009881 NA coding upstream 963037 3728279 ~ 3736645 (+)
AMCG00009896 NA coding downstream 294434 5011378 ~ 5013330 (+)
AMCG00009904 si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230 coding downstream 425059 5142003 ~ 5144936 (+)
AMCG00009906 NA coding downstream 721523 5438467 ~ 5448319 (+)
AMCG00009905 NA coding downstream 741342 5458286 ~ 5459884 (+)
AMCG00009909 NA coding downstream 792140 5509084 ~ 5525562 (+)
G76186 NA non-coding upstream 446128 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 804863 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 902674 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 1096077 3538497 ~ 3603605 (+)
G76077 NA non-coding upstream 1278856 3420612 ~ 3420826 (+)
G76266 NA non-coding downstream 441444 5158388 ~ 5228786 (+)
G76346 NA non-coding downstream 745579 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 1027313 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 1053311 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 1054730 5771674 ~ 5771949 (+)
AMCG00009863 NA other upstream 1931174 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 3276560 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 3330867 1360536 ~ 1368815 (+)
G75807 NA other upstream 3364632 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 3372089 1322618 ~ 1327593 (+)
AMCG00009898 tmem167a other downstream 194026 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 515688 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 1049393 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 1342298 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 2325653 7042597 ~ 7062734 (+)

Expression


Co-expression Network