AMCG00009896


Basic Information

Item Value
gene id AMCG00009896
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5011378 ~ 5013330 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009896
ATGGCGGCAAGAAAAAAGGCACAACTCTTCACTATTTTAGAAACCAGCGCCGAGACGGAAAAGGACCCGGTTTCCGACTCTGAAGCGTTTCCCCTTAACCTGTCTGCGGATGTCAAGTGGTTGGAAATCCCCTTTCGCAACCACGACACGgaggacgaggaagaggaggaagacaccgaggaggaggaggaggaagaggaggaggaatcCGCAGGCGAGCCGGGCACTGGAGCTGCGGACGCCGCTGCTCTCATCGCACAGGGCGGCTGCGGGATCATTTTGGTCCCTGACAGGGGGCTCAAGCAAGAGGACTTTGACGATTCATATTACGGCAGCAGCTGCACAGAAAGCTCGGCCAACGACTCGGATATTGATTTCTCTGATCTGGAGGACGAGCCGGCGGATCTGAGCGCTGCTATTGGGGGCTTGGAGGAGGACTGTACCTCTCTCAGCTTCTGGGGAGAGCCCGACCAGCCGATTGCGATAGAGGAGTTCAGTGCCAGCTCTGGTCCGCAGCACAGCCTGGGAGATGAAGCCGATACCCGTGACTATTTCCGGCTGCTGTTCCCAGACTCGCTGTTTGAACACATGGTGGAGCAGACAAACAACTATGCCCTCTATAGGCAGAGGAGGAGTGGGAAAGTGGACCCCCACTGGCGCCCCACTGATTTGAGGGAGATGCAGGCTTACATCGGGCTGAATGTCTTAATGGGCATCAACCAGCTGCCAGATTATGGCATGTACTGGGCCACTGACATCTTTATTGGCAATGCAGGCTTCAAAAAGACAATGACTGCACGCCGCTTTGAGAAGCTGAACCAGAACATTCACCTGTGCGACCGGGAGTCCGAGCCGGCCCGGGGCCACGCGGGGTACGACGGGCTCTACAAGATCCGGCCCCTGCTGGACGTGGTGCAGGGCAGAATGTGGGAGGCCTATGCGCCAAACAGGTGTCTGACAGTGGATGAAGGGGCAATCACTGTCAAGGGGCGCTTCTCTGCCACCCAGTACATGCCCTCCAAGCCCATTAAAAAGGGCCTCAAAGTGTGGATGCTGTGCGACTCCAAGTCTGGCTACTGCCACCGCGTCAACATCTACGTAGGCAAGTCCAGCGAGGATCTCGGAGGCGTGGGCTACCAGGTGGTCACCTCACTGGTGAGGGGCCTGGAGCACAAGCACCACCACGTTTTCTGCGACAGCTTCTTCACTTCAGTGCCTCTGGTCCAGAAGCTGTTGAAGGAGGGGATGTATGTTTGTGGCACCACCCAGCAGAACCGCAAGGGCTTCCCCGACGCACTGAAGCTGAAGAACGTGGGCAAGCTGGCGCAGGGTGAGTTTTTCCAGTGCCAACACGGCAACATCCTGGCCACCGTGATGAGGGACACTAAAGTGATCAGCTGCCTGTCGTCCAATGCAGCCCCAGGGATTGTTGGCATCAGCCAGGGGAAACAGAAAGACGGCACGGTGTATGGGGTGCCCCGGCCCCTGCCCTTGCTGCTGTACCAGGAGAACATGCGGGGGGTGGACCTGTGTGACCAGCTGCGCGAGTGCTACCAGGTGGGCCGGCCCTGTAAGAAGTGGTGGCGCTACTTCCTGTGGTTCTACCTCAACATCTGCATCGTCAACGCCTTCATCGTCCTGAGGGAGAGCCGTCGGGGCGCCCCGCCGCCTGGCTTCAGCGGCAAACAGTTCACCCAGCGGCACTTCCGCATCCGCCTAGCCCAGCAGCTCATCGGGGACTACCAGGGCACCCGTGGCATGGAGCGTGCCTCCCGCAAGAGGCACTCCGACTCACCAGTGGAGTACGGGCACCGCCTAGAGCGCATGTCAGAGCGTTCCAGAAGGTGTCGGAACTGCACCAACAAGGGCCTACGGCACGAGAGCGTATTTGGGTGCAAGATCTGCAATGTCCATCTCTGCAGGGGTGGTTGTTTCGCAGAATTtcataaatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009896 True 1953 mRNA 0.59 1 5011378 5013330

Neighbor

gene id symbol gene type direction distance location
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding upstream 294434 4699682 ~ 4716944 (+)
AMCG00009891 NA coding upstream 532655 4477621 ~ 4478723 (+)
AMCG00009889 NA coding upstream 534920 4475292 ~ 4476458 (+)
AMCG00009890 NA coding upstream 539405 4346664 ~ 4471973 (+)
AMCG00009885 NA coding upstream 693511 4317038 ~ 4317867 (+)
AMCG00009904 si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230 coding downstream 128673 5142003 ~ 5144936 (+)
AMCG00009906 NA coding downstream 425137 5438467 ~ 5448319 (+)
AMCG00009905 NA coding downstream 444956 5458286 ~ 5459884 (+)
AMCG00009909 NA coding downstream 495754 5509084 ~ 5525562 (+)
AMCG00009911 NA coding downstream 549645 5562975 ~ 5594007 (+)
G76186 NA non-coding upstream 757824 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1116559 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 1214370 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 1407773 3538497 ~ 3603605 (+)
G76077 NA non-coding upstream 1590552 3420612 ~ 3420826 (+)
G76266 NA non-coding downstream 145058 5158388 ~ 5228786 (+)
G76346 NA non-coding downstream 449193 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 730927 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 756925 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 758344 5771674 ~ 5771949 (+)
AMCG00009898 tmem167a other upstream 90494 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 2242870 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 3588256 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 3642563 1360536 ~ 1368815 (+)
G75807 NA other upstream 3676328 1333967 ~ 1335050 (+)
AMCG00009897 NA other downstream 219302 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 753007 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 1045912 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 2029267 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 5289596 10302926 ~ 10313486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031397 NA non-coding NC_007116.7 CM002889.2 46327205 ~ 46330326 (-)
grasscarp (Ctenopharyngodon idella) G180326 NA non-coding CI01000039 null 2336417 ~ 2338943 (-)