AMCG00009897


Basic Information

Item Value
gene id AMCG00009897
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5232632 ~ 5248181 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009897
CTGACACCGCAGCACACGAAGTCTGTGATATATGATCTAGTGCCCTGTTGCAGCACCTGAATCTGAGCCATCTTTCCAGCGAGATAGTTTATTGACCTGTGAGCTCAATAGCACAGATAAGCCAGGCCACTTAAATAGAGCACGCTTGCTGGCAGATAGCAGAGCGAGCATGAACCTGGACTGCAAAAGCCTCCACAGCACTGGAGCCGGGGACTGCGGGGACCAACGGGCCCTGAGAGTCCGGGCCCCAAGCAGGGcacgggaggaggaggaggttaCGTGCCCACACCCAGCAGATGTGGAGATGTGCCAGTCAGTGCTGCCCTGTCATGCGAATGACAGGGGCCAGCTGGGGGCAGGGCAGCTCCTGAAGTGGATTGACACCACAGCATGCCTCGCAGCGGAGAAGCACGCCGGAGTGCCTTGTGTTACGGCTTCAGTGGATGACATTCAGTTTGAAGAGACTGTGAGGGTTGGTCAAATTATCAACATCAAGGCCAAAGTAAACAGGGCATTCAACACCAGTGGGAATTCGAGTGTCGGTGCAGGACGTTCTGACCGGGGTTCTGAAGCGCGTCTGTGTGGCCTATTCCACATTCGTAGTGAAGCCAGCTGGTTCCACGAAGGAGTATCTAATGGAAACTGCGGCGCACTGAAATCAACAGAGAGCACTAAAGTAGAAAGCATCGAGCTCGTCCTGCCGCCGCATGCTAATCACCATGGCAACACTTTTGGTGGGCAAATTATGGCCTGGATGGAGAATGCAGCTACTGTCGCAGCGAGCCGTTTGTGTGGCAGCTACCCCACTCTGAAGTCCGTGGACATGTTCAAGTTCAGAGGGCCCTCCACAGTGGGTGATCGCCTGGTTTTCAAGGCCATGGTCAACAATGCCTTCCAGAAGAGTGTGGAGGTGGGGGTGCGGGTTGAAGCCTACAACTGTGCAGAGTGGAAACAAGGTGGTGTGCGACACATCAACAGCGCCTTCCTCCTCTACAGCCTCTCCGCTGAGCCGCAGCGCACACAGGCCTTCCCCGACGTCACGTTCACCACGAAGGATGGAGAGAGGAGATACTTGGCAGCAATTGCACGAAAAAGAATCCGCCTGGCAAGaAAGCACATTCTGTCTTCCAAAGAAGAGGGGTCCCTGTCTGTTCCCTGGGACAAAAGTAATCAGGTTTATTTAGGCTACAACAATGTGGCTGCCCTCACAGTTTTAGCAGGAAAACAAGAATGGGAGATGAACAGTGTCCAGCCCAAGGTCCGTATCTCCATGAACGAGGAGCAGGACACCCTATCTGTCAAGGTGGAGATGGACGTGGAAGCCCCAGCCGGCCACGTGTTCGCTCTGCTCTCTGACCTCCGGCTTCGGCGCAGCTGGGACAAGCACTACTCGAGCTGTGAAGAAGTGGAGTTTGGGGATGATGCCGACGAGAGGGTGTATCATATTAAATGTCCCCCAATCAACGCTGACGGAGCCAGAGACTTTGTGATCCTGCTGTCCAGGAGACGGCCGTGCAAAGAGGGGGATCCCTACATCATCGCCCTCCGCTCAGTCACGGTGACGGCCGTCCCTCCCCAGGTGGGGTTCACCCGGAGCGAGGCTATGTGCGCTGGGTTTCTCATCTACCATGACAGCCCCGGCTCCTGCAAGGTGTCGTACTACAACCAGGTCACATCAGGAGTCTTGCCCTACATCGCTGGGAACCTGGCGGGGTGGTCTCAGTCCCTGGAGGAGACGGCCGCTTCCTGCATTGCATTTCTAGAAAAAGTCAGtgttaaaacaacaaccttATGAAACAAGCTTTCAGTCATAGATGTCTTAGCCTGTGGATTCCCAAATCCACTGTGTTCCCTAGATTAATTCTCGACTGCGCCAGGCTGCCGATCCTATCTTTGGCACGGACCGGTCTGTCTGCGTCAGAGACTGGAGGGGTCTGTCAAGCTGAGGAGAGGAGGAGCTGAAACAACAATGGACTTGAAATCTGGATATACTTCAAGACCCAACCTGAAGCACAGCTCAGTTTGAGACATCCTGGCAAAATAATAGTTAAAGAATGTCTTAAAGCACACAGTTTGAGTTACCTggtaaatgtaaacaatgtactcatttgtaataaaatgtacatttaccTGAATGTACAAGTAAAAATAAGAAACGGTGCATATcaaccaaaacaaagacatttacaCTCTAACTAATGACAGACATGAATTCAGTCCAACACAAtcaaaattgtaaataaatcttcaatttcCTGTGCA
>TU95253
TCTTGGTGGTGGCAGCAGTCAGAGACACCGTTTAACACCGAAGGCTTCACAGGAGCAGCGCCGGTGTGCTGTGGCAGTGTAGTGTGAGGAAAATCAGTGTAGCTGCTGGTGCTGTAATCATTCTGCTGACAGGAGCTGTGAAGAAGTGGAGTTTGGGGATGATGCCGACGAGAGGGTGTATCATATTAAATGTCCCCCAATCAACGCTGACGGAGCCAGAGACTTTGTGATCCTGCTGTCCAGGAGACGGCCGTGCAAAGAGGGGGATCCCTACATCATCGCCCTCCGCTCAGTCACGGTGACGGCCGTCCCTCCCCAGGTGGGGTTCACCCGGAGCGAGGCTATGTGCGCTGGGTTTCTCATCTACCATGACAGCCCCGGCTCCTGCAAGGTGTCGTACTACAACCAGGTCACATCAGGAGTCTTGCCCTACATCGCTGGGAACCTGGCGGGGTGGTCTCAGTCCCTGGAGGAGACGGCCGCTTCCTGCATTGCATTTCTAGAAAAAGTCAGtgttaaaacaacaaccttATGAAACAAGCTTTCAGTCATAGATGTCTTAGCCTGTGGATTCCCAAATCCACTGTGTTCCCTAGATTAATTCTCGACTGCGCCAGGCTGCCGATCCTATCTTTGGCACGGACCGGTCTGTCTGCGTCAGAGACTGGAGGGGTCTGTCAAGCTGAGGAGAGGAGGAGCTGAAACAACAATGGACTTGAAATCTGGATATACTTCAAGACCCAACCTGAAGCACAGCTCAGTTTGAGACATCCTGGCAAAATAATAGTTAAAGAATGTCTTAAAGCACACAGTTTGAGTTACCTggtaaatgtaaacaatgtactcatttgtaataaaatgtacatttaccTGAATGTACAAGTAAAAATAAGAAACGGTGCATATcaaccaaaacaaagacatttacaCTCTAACTAATGACAGACATGAATTCAGTCCAACACAAtcaaaattgtaaataaatcttcaatttcCTGTGCA

Function

GO: NA

KEGG:

id description
K01067 E3.1.2.1, ACH1; acetyl-CoA hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009897 True 2262 mRNA 0.52 14 5232632 5248181
TU95253 False 1002 lncRNA 0.48 4 5243727 5248181

Neighbor

gene id symbol gene type direction distance location
AMCG00009904 si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230 coding upstream 87696 5142003 ~ 5144936 (+)
AMCG00009896 NA coding upstream 219302 5011378 ~ 5013330 (+)
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding upstream 515688 4699682 ~ 4716944 (+)
AMCG00009891 NA coding upstream 753909 4477621 ~ 4478723 (+)
AMCG00009889 NA coding upstream 756174 4475292 ~ 4476458 (+)
AMCG00009906 NA coding downstream 190286 5438467 ~ 5448319 (+)
AMCG00009905 NA coding downstream 210105 5458286 ~ 5459884 (+)
AMCG00009909 NA coding downstream 260903 5509084 ~ 5525562 (+)
AMCG00009911 NA coding downstream 314794 5562975 ~ 5594007 (+)
AMCG00009914 NA coding downstream 347257 5595438 ~ 5602983 (+)
G76266 NA non-coding upstream 3846 5158388 ~ 5228786 (+)
G76186 NA non-coding upstream 979078 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1337813 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 1435624 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 1629027 3538497 ~ 3603605 (+)
G76346 NA non-coding downstream 214342 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 496076 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 522074 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 523493 5771674 ~ 5771949 (+)
G76434 NA non-coding downstream 527775 5775956 ~ 5776174 (+)
AMCG00009898 tmem167a other upstream 311748 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 2464124 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 3809510 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 3863817 1360536 ~ 1368815 (+)
G75807 NA other upstream 3897582 1333967 ~ 1335050 (+)
AMCG00009915 NA other downstream 518156 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 811061 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1794416 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 5054745 10302926 ~ 10313486 (+)
G77423 NA other downstream 5901445 11149626 ~ 11155469 (+)

Expression


Co-expression Network