AMCG00009898 (tmem167a)


Basic Information

Item Value
gene id AMCG00009898
gene name tmem167a
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 4910970 ~ 4920884 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009898
ATGCGTCCTACCTCTAAATGCGGATTCTTCCGGGTACCTTCTGCTATATTCAACTTCCAGAGCCTGCTGACAGTCATCCTGCTCCTGATTTGTACCTGTGCTTATATCAGAGCCTTGGCTCCCAGCATtcttgataaaaacaaaaccggAGTTTTGGGAATATTCTGGAAATGTGCGAGGATAGGTGAACGTAAAAGCCCGTATGTGGCTTTGTGCTGTGTAGTAATGGccttcagtattttatttgcacagtAACACAATGCATGCAGGGGCACTGGCGGGGGGGCTGGAGCTGGAGTCAGGGACAGCTGTCCCTGATGAGAAGcagcagaaaacaaagaagatGTCATCACAGAAATCAAGGTTGAAAATCCCTGTTAAGGACACATTTCGAAGGTGATCCTGTCTCTGCTTACAATCGCGCAGAGCTGTGGTTGGCATTGAATGCACTGCAGCTATGTGTTGGACCAAGGACATTTCTGAAGAATACAATGTACATTCTTCCCCATTGAACCCCAGTACCTTTATATTTCCCCCTGTAATGGTCTGTTTTATTGGATTTGCTTTAAACCACTgtcctttcaaataaaataaatgtcatattcttgttttctgttaacGAATTGTCACTTCTCATATTACTTATGTTTTGATGTCTTATGTTTTGATGTCATACTACTTCAGTGCAAATTATGAAAGACATAAACCTGAGAATATGTCCTGTATATGCTGTGACATATTCAAGTAATTGATCCTCAAGATTTAATGAAACAGGATTCTATTTAATAAACATGATTAGGGAGGTAGGGGATGTGGGGGGGTGAAGGcaaatgcttgtttttatttagagaAAAGTGTTCTTGCAATAATGGCAGAAAAATTGGCAGAAAAGACCTCTGGGATACTGAAGAGATTATGTGGTACTTTTACCAACAATGTCAGATTCTCTAAATTATAACAGATGTTCAGTATCATTTTCCAGGATTTAAAAACCCCTGTGTTGTTGTAATTAGCTTCCATTGGCAAACTTGTTTTTCAATGGTGGCCATTGTTATGAAATGCATTCTCTCTTAATTAGTTAACCTGGAGCAGAATGGGATTGATATTGAAGGAGACTGCAATCCTCCTTCCTAATATCTGCAGCACATGCTGAAGTTTCTATTTTCGAGAGACTGGAAAAATGAAATAGTGTTTGCAAACATTAACTTCTATGTGAAGCGTGGGCATGTTTTATACTTGTATATTGTCTGTGTGATATTGGTGTTATCCTTCCAAGCAAGAAAGTAGTCTGCAGTGTCATGAAAGCATCTTAATCctgaataaaatagaaaaagaagaCTGATAAAGTGTGGTTTTGTAGCATATAGCAGAAACTCAGCACAACATAGGTAACTATTCATTTTATAGCTAATAATTCAGAGGggtggattttatttatttgcttccCAAATTGTTAACACTCTTTGTATTGACtatatattaaagaaacagACTGATTGAACCCCACCTGATATAAAGATTTGTTCTTTATCTGTACTTTACAAGATCATTTCAAGTCTGTTTTTGTCTCGTGATATCTgaattaaaaaggcatttgaatGCCATTGAAC
>TU95199
ACTTCCAGGAGCACACAGGAAGTGTGATGTGGCTGTGAGAACAGTTTCATTATGTCTGCTATATTCAACTTCCAGAGCCTGCTGACAGTCATCCTGCTCCTGATTTGTACCTGTGCTTATATCAGAGCCTTGGCTCCCAGCATtcttgataaaaacaaaaccggAGTTTTGGGAATATTCTGGAAATGTGCGAGGATAGGTGAACGTAAAAGCCCGTATGTGGCTTTGTGCTGTGTAGTAATGGccttcagtattttatttgcacagtAACACAATGCATGCAGGGGCACTGGCGGGGGGGCTGGAGCTGGAGTCAGGGACAGCTGTCCCTGATGAGAAGcagcagaaaacaaagaagatGTCATCACAGAAATCAAGGTTGAAAATCCCTGTTAAGGACACATTTCGAAGGTGATCCTGTCTCTGCTTACAATCGCGCAGAGCTGTGGTTGGCATTGAATGCACTGCAGCTATGTGTTGGACCAAGGACATTTCTGAAGAATACAATGTACATTCTTCCCCATTGAACCCCAGTACCTTTATATTTCCCCCTGTAATGGTCTGTTTTATTGGATTTGCTTTAAACCACTgtcctttcaaataaaataaatgtcatattcttgttttctgttaacGAATTGTCACTTCTCATATTACTTATGTTTTGATGTCTTATGTTTTGATGTCATACTACTTCAGTGCAAATTATGAAAGACATAAACCTGAGAATATGTCCTGTATATGCTGTGACATATTCAAGTAATTGATCCTCAAGATTTAATGAAACAGGATTCTATTTAATAAACATGATTAGGGAGGTAGGGGATGTGGGGGGGTGAAGGcaaatgcttgtttttatttagagaAAAGTGTTCTTGCAATAATGGCAGAAAAATTGGCAGAAAAGACCTCTGGGATACTGAAGAGATTATGTGGTACTTTTACCAACAATGTCAGATTCTCTAAATTATAACAGATGTTCAGTATCATTTTCCAGGATTTAAAAACCCCTGTGTTGTTGTAATTAGCTTCCATTGGCAAACTTGTTTTTCAATGGTGGCCATTGTTATGAAATGCATTCTCTCTTAATTAGTTAACCTGGAGCAGAATGGGATTGATATTGAAGGAGACTGCAATCCTCCTTCCTAATATCTGCAGCACATGCTGAAGTTTCTATTTTCGAGAGACTGGAAAAATGAAATAGTGTTTGCAAACATTAACTTCTATGTGAAGCGTGGGCATGTTTTATACTTGTATATTGTCTGTGTGATATTGGTGTTATCCTTCCAAGCAAGAAAGTAGTCTGCAGTGTCATGAAAGCATCTTAATCctgaataaaatagaaaaagaagaCTGATAAAGTGTGGTTTTGTAGCATATAGCAGAAACTCAGCACAACATAGGTAACTATTCATTTTATAGCTAATAATTCAGAGGggtggattttatttatttgcttccCAAATTGTTAACACTCTTTGTATTGACtatatattaaagaaacagACTGATTGAACCCCACCTGATATAAAGATTTGTTCTTTATCTGTACTTTACAAGATCATTTCAAGTCTGTTTTTGTCTCGT

Function

symbol description
tmem167a Predicted to be involved in intracellular transport and protein secretion. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167A (transmembrane protein 167A).

NR:

description
PREDICTED: protein kish-A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009898 True 1610 mRNA 0.38 4 4910970 4920884
TU95199 False 1587 lncRNA 0.38 4 4911270 4920846

Neighbor

gene id symbol gene type direction distance location
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding upstream 194026 4699682 ~ 4716944 (+)
AMCG00009891 NA coding upstream 432247 4477621 ~ 4478723 (+)
AMCG00009889 NA coding upstream 434512 4475292 ~ 4476458 (+)
AMCG00009890 NA coding upstream 438997 4346664 ~ 4471973 (+)
AMCG00009885 NA coding upstream 593103 4317038 ~ 4317867 (+)
AMCG00009896 NA coding downstream 90494 5011378 ~ 5013330 (+)
AMCG00009904 si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230 coding downstream 221119 5142003 ~ 5144936 (+)
AMCG00009906 NA coding downstream 517583 5438467 ~ 5448319 (+)
AMCG00009905 NA coding downstream 537402 5458286 ~ 5459884 (+)
AMCG00009909 NA coding downstream 588200 5509084 ~ 5525562 (+)
G76186 NA non-coding upstream 657416 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1016151 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 1113962 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 1307365 3538497 ~ 3603605 (+)
G76077 NA non-coding upstream 1490144 3420612 ~ 3420826 (+)
G76266 NA non-coding downstream 237504 5158388 ~ 5228786 (+)
G76346 NA non-coding downstream 541639 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 823373 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 849371 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 850790 5771674 ~ 5771949 (+)
AMCG00009863 NA other upstream 2142462 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 3487848 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 3542155 1360536 ~ 1368815 (+)
G75807 NA other upstream 3575920 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 3583377 1322618 ~ 1327593 (+)
AMCG00009897 NA other downstream 311748 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 845453 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 1138358 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 2121713 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 5382042 10302926 ~ 10313486 (+)

Expression


Co-expression Network