AMCG00009904 (si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230)


Basic Information

Item Value
gene id AMCG00009904
gene name si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5142003 ~ 5144936 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009904
GTTAGCACTCTATGTGTATGAATATTTACTCCATGTAGGAGCCCAGAAATCAGCACAGACCTTTCTGTCAGAGaTACGATGGGAGAAAAACATCACATTAGGGGAACCCCCTGGATTTCTTCATTCATGGTGGTGCGTATTTTGGGATCTCTATTGTGCGGCACCTGAAAGAAGAGAGACATGTGAACACTCCAGCGAAGCAAAAGCCTTTCACGActa

Function

symbol description
si:ch211-130m23.3 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2).

NR:

description
PREDICTED: single-stranded DNA-binding protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009904 True 219 mRNA 0.45 3 5142003 5144936

Neighbor

gene id symbol gene type direction distance location
AMCG00009896 NA coding upstream 128673 5011378 ~ 5013330 (+)
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding upstream 425059 4699682 ~ 4716944 (+)
AMCG00009891 NA coding upstream 663280 4477621 ~ 4478723 (+)
AMCG00009889 NA coding upstream 665545 4475292 ~ 4476458 (+)
AMCG00009890 NA coding upstream 670030 4346664 ~ 4471973 (+)
AMCG00009906 NA coding downstream 293531 5438467 ~ 5448319 (+)
AMCG00009905 NA coding downstream 313350 5458286 ~ 5459884 (+)
AMCG00009909 NA coding downstream 364148 5509084 ~ 5525562 (+)
AMCG00009911 NA coding downstream 418039 5562975 ~ 5594007 (+)
AMCG00009914 NA coding downstream 450502 5595438 ~ 5602983 (+)
G76186 NA non-coding upstream 888449 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1247184 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 1344995 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 1538398 3538497 ~ 3603605 (+)
G76077 NA non-coding upstream 1721177 3420612 ~ 3420826 (+)
G76266 NA non-coding downstream 13452 5158388 ~ 5228786 (+)
G76346 NA non-coding downstream 317587 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 599321 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 625319 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 626738 5771674 ~ 5771949 (+)
AMCG00009898 tmem167a other upstream 221119 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 2373495 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 3718881 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 3773188 1360536 ~ 1368815 (+)
G75807 NA other upstream 3806953 1333967 ~ 1335050 (+)
AMCG00009897 NA other downstream 87696 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 621401 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 914306 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1897661 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 5157990 10302926 ~ 10313486 (+)

Expression


Co-expression Network