AMCG00009906


Basic Information

Item Value
gene id AMCG00009906
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5438467 ~ 5448319 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009906
GGGAAAGTTCCAGTGTCCACATATCACATGCTGTTTCACAAGTCCCTGAAGCAAACCAAAGCACAGCGTGGATTATGGTCTTAAACTTTAATTGTGTGCCACAATCCACGCAGTGCTTGGTTTGATTGACAGTCTGCGCGTTTGTGTGTGACGCGGGTAATGACGTAGTGTTCTGCTGGCGGGAACGCATTAGCGATCATTGAACAGCAGCGCTAAACCCCAAATAACAACATGTCTCGCACAATTAACTGTATCGTAGCGGTTTGCCCCAACATGGGAATCGGCAACAAAGGCAATCTGCCCTGGCATCCGACAAGATTAAGTAAAGAATTTAAGTATTTCCAGAAGATGACCATGACTCCTACAGTAGAAGGCAGGCAGAATGTGGTGATTATGGGGCGGAAGACGTGGTTCTCCATCCCAGAGATGAACAGACCCCTGAAGAACAGAATCAACATTGTGCTGAGCAGGGAGCTGAAgGAGCCCCCAACGGGAGCGCACTACCTGGCCTCTGACTTCAGCGCCGCTCTCCGCCTGCTGGACACGGCTCCCCTCTCAGGACTGGCTGACCAGGAGGCAATGGAGGCCCCAGCCCAGCGCCGTCTCTTTGTGACCCGGGTCCAGCAGCAGTTTGATTGTGACACATTCCTGCACAACATTAACTTCGACAAATACAAGCTTCTACCAGAGTTTCCAGGCGTGCCAGCAGACCTGCAGGAGGAAAAGGGGATTCAGTATAATTTTGAAGTCTATGAAagcattaaaaactaatttaaccACTGtggaaaaatgaagaaaaactgtGTACTTGATTTACTTTACTGTAcctcactgaaaataaaataaagattagtTTCAT

Function

GO:

id name namespace
GO:0046655 folic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0050661 NADP binding molecular_function
GO:0004146 dihydrofolate reductase activity molecular_function

KEGG:

id description
K00287 DHFR, folA; dihydrofolate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009906 True 859 mRNA 0.48 6 5438467 5448319

Neighbor

gene id symbol gene type direction distance location
AMCG00009904 si:ch211-130m23.3,LOC107589015,LOC107741681,LOC107685246,LOC107561624,LOC108426230 coding upstream 293531 5142003 ~ 5144936 (+)
AMCG00009896 NA coding upstream 425137 5011378 ~ 5013330 (+)
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding upstream 721523 4699682 ~ 4716944 (+)
AMCG00009891 NA coding upstream 959744 4477621 ~ 4478723 (+)
AMCG00009889 NA coding upstream 962009 4475292 ~ 4476458 (+)
AMCG00009905 NA coding downstream 9967 5458286 ~ 5459884 (+)
AMCG00009909 NA coding downstream 60765 5509084 ~ 5525562 (+)
AMCG00009911 NA coding downstream 114656 5562975 ~ 5594007 (+)
AMCG00009914 NA coding downstream 147119 5595438 ~ 5602983 (+)
AMCG00009916 LOC103362416,LOC106953753 coding downstream 269379 5717698 ~ 5744142 (+)
G76266 NA non-coding upstream 209681 5158388 ~ 5228786 (+)
G76186 NA non-coding upstream 1184913 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1543648 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 1641459 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 1834862 3538497 ~ 3603605 (+)
G76346 NA non-coding downstream 14204 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 295938 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 321936 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 323355 5771674 ~ 5771949 (+)
G76434 NA non-coding downstream 327637 5775956 ~ 5776174 (+)
AMCG00009897 NA other upstream 190286 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 517583 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 2669959 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4015345 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 4069652 1360536 ~ 1368815 (+)
AMCG00009915 NA other downstream 318018 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 610923 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1594278 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4854607 10302926 ~ 10313486 (+)
G77423 NA other downstream 5701307 11149626 ~ 11155469 (+)

Expression


Co-expression Network