AMCG00009915


Basic Information

Item Value
gene id AMCG00009915
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5766337 ~ 5769052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009915
ATGTCTCGTTTCACGTCCAAGTCCCGAGCGGACAAGTCCCGTGTCCCCTCCGCCCCCGTGCCCCCTTCAGCCCCCAGCGCAGTCGCCCCTGCAGACATCGTCCCAGGACGCCTCACTGAGTCCGACTGGGTTGCCATGCTGATGCAGGAGGAGGGCGAGGAGGTGGTGGCGGACATTGTGGACAAGCTGATGTCCCGGGTGATGGAGGAGTGCTACAGAGTGTACCTGCAGAGACAGCTGGTGCCGTTCACCGTGTCCCAGGCACGGGAGGCCCTGCTGCAGATGGTGGAGTGGCGTTTCCTGGTGCGGGACGAGGGCGAGGGGCCGGACAGCACCTCCTCCtgggaggaggatgaggagccCCAGCCGTGCAGCACAGACTCCTGGGCTCAGGGCTGTGTGCCCGTCCTGCACACTGGGCTGACACCACGCACCACACTCCCACAGGCGCCCTCTACCAGGGAGCAGACGGCAGCAGGGAGTCCACAGCCCCAGCCTGAGCTACAGCCACTGGAGTCTGGGATGGATGCAGCGAGCATAGCGGTCCCTCTCCAGAATAGACCGGCTGAAATCaaagcagagaagaaaacacTGTCTGGGCCCAAGAAAACAATGCCTCCTTTGCGGATGCCAGCTCCCCCACCTAAAACAGAGCAGAGGAGCAAACAGTTTCCCCACCAAGCACCGCTGCCAACAACCAAAGAGAAGGTCCGCCCCCAGCCCCTGCGGGAGTCCCACACCGAGGCACCCCAGTCTACCCAGCAGGAAGGGCTGGGCCCGCTGCCCTCTCCACCTGCTGCTCCCCGTCCTCCACTCCTGGACGCCACAGCAGGAGGGCGCTCAACTTGGGTTGGTGCAGTGCAGAAGCTGGACCCTGCCCGTCTCCCACGGCACCGCATCTGGCCTGCCTTCGAGGTACTGGAGGCCAACGCCCTGCAGCACCCCCTGGGGAGGACAGCCAGCACCCTGCCAGGAAGGGCCAGGCAAGAGAAGTGGCGAGCAGGGGGTCAGTTTGCTCTCCGCCGCCtggctcctcttcctcctcccactGTGCCAGGTCAGGTCTTGCACCAGGAAGCACAGAAACCACACAGGAGAAGCGTCCTGAAGCCCTTCCCTCTCCCAGACCCTTCCCCTCACCCATCCAATCCAATATACACCCAGGAGGACAGCAGCCCTCCCCGTGGCCCCCTTCCCCTCACTGCCCATCTGCTGCTGGACTCCATGGAGCTGTCCCCTGGAGTGTCCCTCAAGGACCCCCGCTGGCCCAGGACAGGCTCCTGGAGGGAGACCCAGCCCCAGCCCGACTACAGCACAGCTCTGAAGCCCATCAGAAGCACCCTGCCCTCTCCACTCATCTCTCTGGACCAGCTGGTCACAGGACAGCACCCACTGGCGAGCCCCCACACTTCGCTGGCTGGGCAAACTTAG
>TU95417
CTCAAGGACCCCCGCTGGCCCAGGACAGGCTCCTGGAGGGAGACCCAGCCCCAGCCCGACTACAGCACAGCTCTGAAGCCCATCAGAAGCACCCTGCCCTCTCCACTCATCTCTCTGGACCAGCTGGTCACAGGACAGCACCCACTGGCGAGCCCCCACACTTCGCTGGCTGGGCAAACTTAGACCCTGCAGGCACACACAGACTATAttcaattttgttgttgttgcgttttatttgtattctgatgcaaatctgtaaattaaatttgagaAATTAACATAAGAAAACGAGAGCACCAACCATGTGgtataaaatgaaagcaaaacatgCCTTGTTCTCAGTTTGATCTGAAATGGCTCATCTAAAATGTGACTCCTTTAAAGTGAATGGTGATCATTTTCCTCCTGGAATAAGTGTGTAATTGGGTCATGTAGCACCAAAACCTTCCACATCTGTACTCCACAACCTCTCTAGCAGCTCAGTACTTTATCTTGACCATCAGCCagtgtctttttgtttctctattagtaaatgtaatcattattattattattattttttttaaaaggccaGGTGATCCATCCCTCACTCACACTCTAAACTTCTACACAATCAACTGTCCCTCCTTAATCCAAGAGACGCCTAACTAAAGGCACACTGGACAAATGACACGACTCTcttaataaactatttaccatcTCTGTGATCCTGTCGTCTCTTGCTTGGTTTTGGTTGGTGCCAACCCTTCCATTTAATTCTTGAACTCTCAACATCTCAACTGTTCATAATCTCTCAGCCTCAACCACCGTTTACATGTATTGCACTCTATCCATCTGGGCCACAGCGCCCTCTCTCTGGCAGTGTCAGTTCCTGCCGTTGTCGATTCTATCCATCTCATGCTGTGTGCACCTATCTCACTCTTGCTCGTTTTCTCAGAGAAGGAGCATCTCTTCTCTTCCCACTGTCTGCGGTACCGCCTGACCCCTCCCGTCAGGCCGTGTGCGTCTTGAGGTGCAAGGTGAGGCTCCTCATGTGTTTGTACAGCTGGCCGCAGTCTGGGCAGGGGAAGGGGGCCTCGCCAGTGTGGATCTTGCGGTGTGCCAGCAGGCTGTTGGAGTGGCAGAAGCGCTTGGGGCACTGGACACAGGCATAGGGCTTCTCCCCCGTGTGGCGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009915 True 1431 mRNA 0.64 2 5766337 5768059
TU95417 False 1176 lncRNA 0.49 1 5767877 5769052

Neighbor

gene id symbol gene type direction distance location
AMCG00009916 LOC103362416,LOC106953753 coding upstream 22195 5717698 ~ 5744142 (+)
AMCG00009914 NA coding upstream 163354 5595438 ~ 5602983 (+)
AMCG00009911 NA coding upstream 172330 5562975 ~ 5594007 (+)
AMCG00009909 NA coding upstream 240775 5509084 ~ 5525562 (+)
AMCG00009905 NA coding upstream 306453 5458286 ~ 5459884 (+)
AMCG00009919 NA coding downstream 17373 5786425 ~ 5794926 (+)
AMCG00009923 ube2r2 coding downstream 121228 5890280 ~ 5894977 (+)
AMCG00009922 NA coding downstream 163969 5933021 ~ 5940090 (+)
AMCG00009926 NA coding downstream 217215 5986267 ~ 5998592 (+)
AMCG00009930 NA coding downstream 343244 6112296 ~ 6149391 (+)
G76408 NA non-coding upstream 15125 5744257 ~ 5751212 (+)
G76346 NA non-coding upstream 303526 5462523 ~ 5462811 (+)
G76266 NA non-coding upstream 537551 5158388 ~ 5228786 (+)
G76186 NA non-coding upstream 1512783 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1871518 3891161 ~ 3894819 (+)
G76417 NA non-coding downstream 1203 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 2622 5771674 ~ 5771949 (+)
G76434 NA non-coding downstream 6904 5775956 ~ 5776174 (+)
G76460 NA non-coding downstream 128258 5897310 ~ 5900982 (+)
G76484 NA non-coding downstream 176654 5945706 ~ 5946053 (+)
AMCG00009897 NA other upstream 518156 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 845453 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 2997829 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4343215 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 4397522 1360536 ~ 1368815 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 290190 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1273545 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4533874 10302926 ~ 10313486 (+)
G77423 NA other downstream 5380574 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5520851 11289903 ~ 11389245 (+)

Expression


Co-expression Network