AMCG00009922


Basic Information

Item Value
gene id AMCG00009922
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5933021 ~ 5940090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009922
TTTGACGCAAATTCTGCGCGTCAACAACGTACCCAATTGGTAGCTTTTATAAGTGCTCTTTCGGCGTGTTGTTCTAGTGCTCATCTCGTTTTAAACGTGCGCTCATTAATGGCAAATGGATATAAAGAGGTGCTGTTCTCTCGGGGAGGCGGGGAAagtGATAATTCGGATATTTGGGATGACACCGCATTAATAAAGGCGTATGATAAGGCTGTGGCTTCCTTTAAGtggaAAGTTGGAGACCCCTGCAATGCAGTTTGGTCAGAAGATGGCAAATCATATCTTGCCACTATTACGTCCATAGACCACAAGAAAGGAACCTGCATTGTTGTGTACCGTGGGTATGGGAATGAGGAGGAGCAGAATCTATTGGACCTGTCTGAGAATTCGGACGAAGAAATTGGGATGGCACCTGCAGCACCGCTGATCCCCCCGCCTCCTCCAATGGGTCCAGACTTGGGAGACGGCGATGAGGCTTTGGGGTCCATGCTGATCGCTTGGTACATGAGTGGCTACCACACCGGCTATTATCTGTGCTGCCTCAGGGATGAGCCGATTCTGTCTCCTTCGTGCACCAGCATCCACAACAGCAGCAAAGCGGACTTCAGGCATCAACTGTGTGGCATCCTTAGCACATGAGCATGACCACCATCTGGACTGAGCTGAATGGGGTACTTTCTCTGGCATTTTCAGGAAGGCACTTTCTGTTGGTCTTTTATCAACAAACCCATGATACCTTACATGGTCTTAGCAGCGATCTGATGGCCCAGCATGCATCTCTTCCTTtccagtgttatttttttctactgtGCTTGAAGTCCCCGACCAGTATCTGTTCACCGCCACCACAGCTGGTTGGTCCTTCTTTCAGCAGCTTCTTTACTCCTGAGCATTTCATCTGATGTCCCTGAGAAACTAGATTGTGAAGTGTGCTACAATTCCTTGACAACTTACTGGTTAAATGCGGACTGTTTGTTCTGGCTGATCCACTTGAGCAGCTAGTTGACCTTGTCCAATGGCACACAACTCTACCAGGTGAACAAGGTGCGCTGATATGGACTATACCACAGTATCCATTCAAAGTGTGAATCTTGGGTGGAAAACTAAACAATTATCCAACGTCTGACAGCATTTTTAGTCTCTAggaatttaaaactttttcGGGATGGGAAAGTTGTCCttcatttttaatgcattgctGGAAATGGTGGTAACTTAATGCTCCTGCTACCTTGTTTTACCCTGTTAAGGCCAAACATCTCGGCACCTGGTCATGACGCCATGTAAACCATCCTTGACTAAAACCCGAGTAAGGACCCTTAGTCTCAATCGACCAATCCAGTGTGGGACTCTCAACCATCTCCTAACCCAGTGTGCTTGTGGTCTCTGATGTGGTGCTGGCAATTGTGTGAAAAGCAAGATCTTAGAGAGAGGAATCTCAATGGTCGGTAGTGTGAATCAGAGAATACAATTActtattgatttcttatttatcaatttaatttagttttatcagtcattttactttttgtgtgcataatgtgaaaataaaatgtttcccaTTTATCAAATTTTGCATTATCAATCTTTTATGGTTTCTATAAATATAGCTTCTTGCTTCTCGACTGTTGTTAAGGAAATCTTGTACCCTctgtgacaaaaaaataaagtccaaAATCAAAACCCTTCCAGCTCCTCCAAATATGAAGTAAAGCTCctacaaataagtaaatcattCTCAATCCcctttaaaaagtaatgaatgtGCCTTTGTCTTAAATGTAATctgcataatgcaatttacagaaattaaagttcccttg

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K13129 SMN; survival motor neuron protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009922 True 1823 mRNA 0.43 5 5933021 5940090

Neighbor

gene id symbol gene type direction distance location
AMCG00009923 ube2r2 coding upstream 38044 5890280 ~ 5894977 (+)
AMCG00009919 NA coding upstream 138095 5786425 ~ 5794926 (+)
AMCG00009916 LOC103362416,LOC106953753 coding upstream 188879 5717698 ~ 5744142 (+)
AMCG00009914 NA coding upstream 330038 5595438 ~ 5602983 (+)
AMCG00009911 NA coding upstream 339014 5562975 ~ 5594007 (+)
AMCG00009926 NA coding downstream 46177 5986267 ~ 5998592 (+)
AMCG00009930 NA coding downstream 172206 6112296 ~ 6149391 (+)
AMCG00009928 NA coding downstream 209928 6150018 ~ 6154858 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding downstream 240313 6180403 ~ 6185389 (+)
AMCG00009934 NA coding downstream 285446 6225536 ~ 6241567 (+)
G76460 NA non-coding upstream 32039 5897310 ~ 5900982 (+)
G76434 NA non-coding upstream 156847 5775956 ~ 5776174 (+)
G76418 NA non-coding upstream 161072 5771674 ~ 5771949 (+)
G76417 NA non-coding upstream 161929 5770255 ~ 5771092 (+)
G76408 NA non-coding upstream 181809 5744257 ~ 5751212 (+)
G76484 NA non-coding downstream 5616 5945706 ~ 5946053 (+)
G76486 NA non-coding downstream 7788 5947878 ~ 5950820 (+)
G76550 NA non-coding downstream 221366 6161456 ~ 6166615 (+)
G76555 NA non-coding downstream 227521 6167611 ~ 6168308 (+)
G76658 NA non-coding downstream 801842 6741932 ~ 6742239 (+)
AMCG00009915 NA other upstream 163969 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 684840 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1012137 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3164513 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4509899 1409180 ~ 1423122 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 119152 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1102507 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4362836 10302926 ~ 10313486 (+)
G77423 NA other downstream 5209536 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5349813 11289903 ~ 11389245 (+)

Expression


Co-expression Network