AMCG00009923 (ube2r2)


Basic Information

Item Value
gene id AMCG00009923
gene name ube2r2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5890280 ~ 5894977 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009923
GCTCACATTAAATTCCCCATTGACTACCCCTACTCCCCACCCACATTCAGGTTCCTCACCAAGATGTGGCACCCTAACATCTATGAGAACGGCGACGTGTGCATCTCAATCCTGCACCCCCCTGTGGACGACCCCCAGAGTGGAGAGCTGCCCTCCGAGAGGTGGAACCCCACACAGAATGTCAGgacCATCCTCCTGAGTGTGATCTCCCTGCTGAACGAGCCCAACACCTTCTCCCCGGCCAACGTGGACGCTTCCGTCATGTTCCGCAAGTGGAGGGACAGCAAGGGCAAGGACAAGGAGTATGCTGAGATCATCAGCAGCTCGGACCTGCTGTATGACGACCTGTACGACGACGACAtcgaggaggaggacgaggaggaagaGGGCGACGTGGCCGaggcgggggaggggggcgaGGGCGACTGCTACGACGACGAGGACTCCGGCAACGAGGAGTCCTGA

Function

symbol description
ube2r2 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human UBE2R2 (ubiquitin conjugating enzyme E2 R2).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 R2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009923 True 465 mRNA 0.60 4 5890280 5894977

Neighbor

gene id symbol gene type direction distance location
AMCG00009919 NA coding upstream 95354 5786425 ~ 5794926 (+)
AMCG00009916 LOC103362416,LOC106953753 coding upstream 146138 5717698 ~ 5744142 (+)
AMCG00009914 NA coding upstream 287297 5595438 ~ 5602983 (+)
AMCG00009911 NA coding upstream 296273 5562975 ~ 5594007 (+)
AMCG00009909 NA coding upstream 364718 5509084 ~ 5525562 (+)
AMCG00009922 NA coding downstream 38044 5933021 ~ 5940090 (+)
AMCG00009926 NA coding downstream 91290 5986267 ~ 5998592 (+)
AMCG00009930 NA coding downstream 217319 6112296 ~ 6149391 (+)
AMCG00009928 NA coding downstream 255041 6150018 ~ 6154858 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding downstream 285426 6180403 ~ 6185389 (+)
G76434 NA non-coding upstream 114106 5775956 ~ 5776174 (+)
G76418 NA non-coding upstream 118331 5771674 ~ 5771949 (+)
G76417 NA non-coding upstream 119188 5770255 ~ 5771092 (+)
G76408 NA non-coding upstream 139068 5744257 ~ 5751212 (+)
G76346 NA non-coding upstream 427469 5462523 ~ 5462811 (+)
G76460 NA non-coding downstream 2333 5897310 ~ 5900982 (+)
G76484 NA non-coding downstream 50729 5945706 ~ 5946053 (+)
G76486 NA non-coding downstream 52901 5947878 ~ 5950820 (+)
G76550 NA non-coding downstream 266479 6161456 ~ 6166615 (+)
G76555 NA non-coding downstream 272634 6167611 ~ 6168308 (+)
AMCG00009915 NA other upstream 121228 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 642099 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 969396 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3121772 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4467158 1409180 ~ 1423122 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 164265 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1147620 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4407949 10302926 ~ 10313486 (+)
G77423 NA other downstream 5254649 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5394926 11289903 ~ 11389245 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_01099082_01112685 CDC34A, UB2R1, CDC34, UBE2R2, CDC34B coding CI01000073 null 1098840 ~ 1113138 (+)