AMCG00009928


Basic Information

Item Value
gene id AMCG00009928
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6150018 ~ 6154858 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009928
GTGGGGAATACCTGGCATTGCCCCACTGCCAGTAGGGTTCAGTGAGAACATCTCACCGGCACACCAGTAAAAAGGTATTGCAGAGGAATAGAATGATTCACAAAAGGTGGTGTAATGGCATCAAGATCCCTCACTTGTCACCGCAATCCAAAATCAATACCTTCTAGATAATCTAACATATTGACAGCAGCTGTCTATGGAGGAGGGGGTGGGCGCTCCTCAGTGCTGCAAGTAGAAAACCATTTCCTATAAGTACTGGACTGTGATAAAGCGCTCCCGCCCGGCAGCTGAGCTCAGCGGATAGGAATGCGCCTGACAGCTCCAGAGCGCCGGACTGCAGCGCACAGGGCAGGGCTGCATTGCGCTCTTGGGTCGGCTCTCCAGTGTGTTTTGGCTTTTTGTCTTTATCGTCGTTCAGTAAAGCTGGTGTCCTTTCATACATCGCTTAAGCCGCACCAGCAAGAAAGTTCACTCACAGCGCGTTAAACATGGCGATGAGAGAACTGATCATCCTGTCGTGGATTGCATTCACGGCCACGGCTCAACACGGAAACCAGAGCGGACCAAGAGGTTTCCCATTATTCAGTGTAACAGGAACCGATGAACCCATTGAATACTTAGATGTGTCCAGTAGTAGAGAAGGAAGTGGATCTGGATTCGGGTTGGAGCCAGTGAAGGATAAAAAAATCCCAGCTGTCCGCAAACAATATATAACGCCAGAGGCCAGTCAGTTTCTCACTGGATCCTTGATGACCGCATTCATCCCCACAGTTTACACTCTGGTTTTTCTCCTCAGCCTTCCTCTAAATGGCATCGCAATCGTCATGTTCGCGATTAAAATACATCCTAAGAAGCCAGCCGTGATATACATGCTGAATCTGGCCGTTTCGGACTTGCTGTTCGTTCTCTTACTTCCCTTCAAGATCTCCTACCACTTCAATGGCAACAACTGGGTATATGGGTCTGGGATGTGCAGAATAGTCACGTCTGCTTTCTACTGCAACATGTACTGCTCTGTTCTGCTCATGATGTGCATCAGTGTGGACCGTTTCATGGCGGTTGTTTACCCCATGGCCTCCCTCGCCTGGCGCAGTCAGCAGAATGCACTGGCTGTTTGTTCGGCCATGTGGCTGCTGGCCATTGGCGGGGTCATGCCCATTCTCCTGTCTGAGCAGACCGTCCATTTACCAGACCTGGGGATTACCACCTGCCATGACGTCTTGGAAATCGAAAAGTTCACAGGCTACTACCTTTACTTCTTCCCCATTTTCTGCtccattttcttcttcatcCCCCTCATTTTTACATCTGTGTGTTACATCCGTATTATTCAGTGTCTCAGCTCTGCCAACGTGGCAAACAGGTCCAAGAAGACCAGAGCTATTATCATGGCCATTACCGTCTTCATTGTCTTTGTCGTTTGCTTCACGCCGACCAATATCATTTTGCTCACTCACTATGTCCAGTTTGCAGGAGGACACAATGACAGCTCTTACGTCGCCTATCTGCTCTCTATGTGTATTGGCAGTGTGAGCTGCTGCCTTGACCCCTTGCTTTACTACTTTGGATCCTCACAGTGCCAGAAGCAGGTGTGCAACCTCCTGCAGTGTAAAAGTAGCCCGGAGCTGTCAAGCACCACACAGTCTGAAACCAGGAGCAGTAAAATCGAGAGCTTTCCAACAAGCCTTGGCAGTCAGTATAAGAAGCTGATGGCTTGATTTACTACAATATTACTCTACCTTGGGTGCTTTATAACAGCATTGCCCACCAATTTCTCAGCACATTTATAGAactgaaatgtgtgcatttagATGAAAAGCCATATTGGTATTGAAAGCATGCCTTTCCAAACCATTGTAAGATTAAAAGTCAAAGTTTAAACATATCCTCCTATCAGGAAGCTTGTTCTCTGTATTAGGCTTGTCATTTCCTCACACATATGATGCATAagtgcatataaatataatatatgctTTTTGTCTCTAAGCTATTCAAAGTTGTACTTGTAACAGTGTTAAGCTGATGGCATCAGtgttattgtttatgttttttcatctcttctGGAACAGGTTTAGCTAAAGAAAGGAGGTTATCTTCAGCTTTGCAATGCATATTCACTTGCCAGAGTTAGTGATATGCATGCAAAGCCACTGGGGAAACTCCCATTATACTAAACATCCTGTTAACATATTTTCCTGTACGTTCCATGTTGGtgtttgttaattgataatcaTGCATGTTTGCACATATGTCTTGCTTTACTTCACATACAAACAGGCTGGCCTGCTTTGGAGCTTTTGGTTAATGTTTTAGGAAAGCAAGTCAAACTATACTGAATGCTAAAGTCAGCCTTAGTTTGTATTCAAATGCTTAattcattttatacaattacagatATTGTACTTCAATTTTACCAAAATATATTGTGGCCATGTCTAGTAAAACATTGTCTATTCGATGAGCATATGATGTGCTATATAGTTGAGGAAAAACATCTGCAGATTCCTCTGAAGTATTTGATTATTGCAACATTTGTTCTTATTTcaagacacacaaaaatgtatattctttatCTCCTCTTTAACATATAGATTGAATTGTAATATTATCAGCTACAATAATGATAATTCCATTATTTGAAAAGggcaaatgaacattttgttaaatgtttaaaagtaaacattttccatGATTACACAGTTTATAGAGAGAGAAGGATCAGTTTAATCTTACTAGTAActttatgtgtgtttttcattgtaaacaTGGGTGTTTAATCTACTTGTTCTTCATTTAAATTCTTGTAACATGTAATCTGCATAAATTAATAACCAAAGGTTATTGACAAATTGCAGTGTCTTTCGTTTCTTTAAGTTGTatgttgtgtattattttataattagggCATTACATATAAGATGGactcttaataaaaaaaattaaaaagttactGTGGTGTTCAGGGGCACTGGAAATCTCTTTCAATCCTGCTTATAAAACCGAATAatcatgttatttgttttttaagcatgTATCCTTTTTTTGCTGAACATGTTTGTCAAGCCACACTGTTGGATCTGAGTTGTTCTGAGGTCCTGTGCTGTGTACAGATTGGCTGTTGTGAAAGCCCCTGTGACCTTCTGTTCATATGATGACATTCGGCACAGCCAGCATTGATTAAGTTTTATGGTGAGTGTACGTACATCAAACAACACAATGTTGTTGTGTCACATGGGTGGAACTGTGGTTCAGAGAGAacagcactgaaaacatttaCTTCCTGCTTAGCGTCCATATCTTGATCCCATGGAAAAcctctgaaatgtatttgaacacTGAACCTGGAACATACCAAAGAGGTTTGCATATCTAGTAACTGCACTGTGGGAGGCATGGATTAAGGGTCTGGTGCTGCTTTCATAGTGTCATGTCAGAAATACAAGGGATTGTCATAATGAATCATATCAGGGTTGGAGCCATAAGTGGCACCTCTGCTCATAGAGTCACACATTTCCTGTCAAATTAGTCTCATTGGGGACCATTGCGTGTTTTACCTTTCAAATATAAACCCAGGCTTTTGAGCAAGGAATGTGTCAAGGCACACATTGTTAGTCATAATTGTAAATCAATAACAGCGGAAGACTGCCTAATATGACAATGTTTTATGCTGCAATACTGATTACAACATAATACCTACTGCTCACTTCAG

Function

GO:

id name namespace
GO:0070493 thrombin-activated receptor signaling pathway biological_process
GO:1902037 negative regulation of hematopoietic stem cell differentiation biological_process
GO:0098508 endothelial to hematopoietic transition biological_process
GO:0016020 membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015057 thrombin-activated receptor activity molecular_function

KEGG:

id description
K03914 F2R, PAR1; coagulation factor II (thrombin) receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009928 True 3709 mRNA 0.42 2 6150018 6154858

Neighbor

gene id symbol gene type direction distance location
AMCG00009930 NA coding upstream 627 6112296 ~ 6149391 (+)
AMCG00009926 NA coding upstream 151426 5986267 ~ 5998592 (+)
AMCG00009922 NA coding upstream 209928 5933021 ~ 5940090 (+)
AMCG00009923 ube2r2 coding upstream 255041 5890280 ~ 5894977 (+)
AMCG00009919 NA coding upstream 355092 5786425 ~ 5794926 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding downstream 25545 6180403 ~ 6185389 (+)
AMCG00009934 NA coding downstream 70678 6225536 ~ 6241567 (+)
AMCG00009935 pde8b,LOC106568179,LOC106563036,LOC106928739 coding downstream 95042 6249900 ~ 6284991 (+)
AMCG00009940 scamp1,LOC107599399 coding downstream 375206 6530064 ~ 6538910 (+)
AMCG00009945 bhmt,LOC105015174 coding downstream 510832 6665690 ~ 6670486 (+)
G76486 NA non-coding upstream 199198 5947878 ~ 5950820 (+)
G76484 NA non-coding upstream 203965 5945706 ~ 5946053 (+)
G76460 NA non-coding upstream 249036 5897310 ~ 5900982 (+)
G76434 NA non-coding upstream 373844 5775956 ~ 5776174 (+)
G76418 NA non-coding upstream 378069 5771674 ~ 5771949 (+)
G76550 NA non-coding downstream 6598 6161456 ~ 6166615 (+)
G76555 NA non-coding downstream 12753 6167611 ~ 6168308 (+)
G76658 NA non-coding downstream 587074 6741932 ~ 6742239 (+)
G76659 NA non-coding downstream 599663 6754521 ~ 6754936 (+)
G76663 NA non-coding downstream 635908 6790766 ~ 6792207 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 64212 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 380966 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 901837 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1229134 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3381510 2752260 ~ 2768508 (+)
AMCG00009959 NA other downstream 887739 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4148068 10302926 ~ 10313486 (+)
G77423 NA other downstream 4994768 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5135045 11289903 ~ 11389245 (+)
G77541 NA other downstream 5545848 11700706 ~ 11701081 (+)

Expression


Co-expression Network