AMCG00009930


Basic Information

Item Value
gene id AMCG00009930
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6112296 ~ 6149391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009930
TGGACGAGATACATGAGACAGTTCCTGCTCGAGAGTGTCTGTGACCTGACTAAATGTCTTTATGTCCTCAGGTGGATGGAGGCCTGTCTGGAGGAGGAACTACCCGCAACGACTGAGCTGGAGGAAGGTCTGCGAAATGGCGTCTTCCTGGGAAAGCTCGCCAAATTCTTTGCTCCAAAAATGGTGTCTGAGAAGAAGATCTATGACCGAGACCAAGCTCGTTATAAGcGATCGGGACTTCATTTTcgacacacagacaacactgtaCAGTGGCTGAGGGCTATGGAGTCGGTAGGATTTCCAAAGaTCTTTTATCCCGAGACAACAGACGTTTATGATCGAAAAAATATGCCTCGGgtgatatattgtatacatgCATTAAGtTTATACCTGTACAAACTGGGAATAGCACCACAGATACAGGACTTGCTAGGCAAAGTCGATTTCACAGAGGAGGAGATCAGCAACATGCGCAAAGAGCTGGAGAAGTATGGAATACAGATGCCTGCCTTCAGCAAGATTGGGGGAATCCTCGCCAATGAGCTATCGGTGGATGAAGCTGCATTGCATGCTGCGGTCATTGCCATCAATGAAGCGATAGACAAAGGATTTGCAGAGCAGACTCTGAACACCCTGAAGAACCCCAATGCCATGCTGAGGAACACACAGGACAGCCTGGCTCAAGAATACCAGGATAAGCTCAGTCAGACCAAGAAGATCAAACGGGAAAATGCTTCAAACAGGAGCTCTTCTGTGTCTTCTGAAGAAAGAGATGTGTATGAGGAGTTACTGACCCAGTCAGAGGTCCAGAACAGTGTTAACTTTGTGAACACTAAAGCAGCAGTGAAGGAGGTGAATGATGCGATCAGCAGGCAGGATGAAGGCGCTCTATTGGCCAGCCTGAGCCTCCCAGCCCTGGGGCTGCTGGGAGTCCTGGAAAGCAACTCTCCATGGTACCTGGACCACTTCTGCTCCTGTAAAGAACAGAAGACGCAGCTGGAAAAGGATGAGATCCAGCGGGTGGTAAGCTCCTGCAATGAATTTGCAGAAGCTCATAAACaaaAACTGGAGTCTGTTGCTGCGATCAACACTGCGATCCGCAGAGGCAGCCCCCCCCACACCGTCGCTGAACTCCAGAACCCTGCAGCGCAGCTCCCCATCGTGTACGAGTCGGCGGCCGACCTCTATCAGTCAGAGCTGTTCAACTTGCAGAAACAGAGCCCTGGTGCGGACCTGGGACATGAGGAGCTCTCGGTCGCTGTGGAGATGCTGTCAGCCGTGGCTGTATTGAACCAGGTGCTGGACAGCAGGGACTCGCAGGGAGTAATCGAGCAGCTCAGCGACTCGCCCATGGGCTTCAGCAACATGGACCCTGACAGCCTGCAGAGGTATGCCGAGATGCTGATCTCTCTCAAGGCTGAAGCAGCTGCTCAGGGACAAGAGTTTCTGACCTGGAATGACATCCAGAAATGCATCGATGCCATCAACACCCAGGTCCACGAGGAGCATGAAAgAATCATTGCTATTGGTCTGATAAATGAGGCTCTTGATTCTGGGGACCCTGAAAAGACTCTGGAAGCGTTACTGATGCCTACAGCCAAACTACAGGGAGTGAATCCCCCGACAGCCAGGCACTATCATGATGTTCTACAGCAAACTAAAGCGGACATATGTGAGAGTTCTGGAGATGGCTCGGCTGAGCTGTGGCTGGACCAGATCCAGGACGGGATTCACTGTGCCAACAGGAACGAAGAAGAGGCCATTAAATTGGCTGCTGCAATAGCAGATATTAATCGTGAGGTAGCGGGGGGAGACGTGCAGAAGACGTTGACAGCACTGACAAGACCCGACGCCGGCCTCCGGGGCGTGCAGCCAGAGTGTGCAGACACTTACTTTAACAACCTGTCAGAGAAACAGACCCAAAACACTGGAGAAGGATGCAACGGCAGTGTTTGGGTGAAGCACAAAATCAAGGACAAATTTGCTTTCTTCTACAACTTGCAAAGCGGAGAGAATATGTGGGCTGAGCCAGATGGCTTTAGCATCATCGGGGGCATCACTGCGGATTATAACCGAGAGCAGCTGTGGCTGGCTCACGAGAACCTCGTCATTCAGCTGCAGGCCAGGGCCCGGGGTTACCTGGTGAGGACGTCACACTGCAAGAGACGGGAGTACCTCCGCAGACAGGAGCCCACAGTCATCAGGCTGCAGGCTTCTTGGAAAGGATATAAACAGAGGAAGACTTACAAGGACAGACTGAAAGTACTGCAGGATAATGCGGCAGCCATCGTCAAGATTCAGTCATGGGTGAAAATGTGGACTGCAAAACGAAGATATTCTCAAAGGCTTCAGTATTTTAAAGACCATGAAAAGGAAATTGTTAAGATTCAAGCTTTCCTGAGGGCAAATAAAGCCAGAGAGGATTACAGGACACTGACCGGCTCTTCAAACCCTCCTCTCAACGTGGTGCGCAAGTTTGTCCATCTGCTGGATCAAAGCAACCTGGACTTCCAGGAGGAGCTGGACATGACCCGCTTGCGAGAAGAGGTCGTCACCAAGATCAGGTCTAACCAACAGATGGAGAAAGACCTCAATCTGATGGACATTAAGATTGGGCTCTTGGTGAAGAACAGGATCACCCTGCAGGATGTTGTGTCTCACAGCAAAAAGTTAAACAAGAAGAGCAAAGGGCAGGTTGGCGACATGGGCATGGGCGATAAGCAGGGTATTAAAGGCCTGAGCaaggagaagagaaagaaactgGAAGCTTACCAACATTTCTTCTATCTGCTTCAGACCAATCCTACATATTTGGCCAAGTTGATCTTCCAAATGCCCCAGAACAAGTCCACAAAGTTCATGGACACGGTCATTTTCACACTGTACAACTATGCCTCTAACCAGCGAGAAGAATACCTGCTGCTGAAACTCTTCAAAAcggctctggaggaggagatAAAGTCTAAGGTGGACCAGATACAGGACATTGTCACTGGCAACCCCACCGTCATTAAGATGGTGGTCAGCTTTAACCGTGGGGCGCGAGGTCAGAACGCTCTGAGGCAGCTGTTGGCTCCCGTGGTTAAAGAGATCATTGAAGACAAATCCCTGGGCATAAACACCAACCCAGTGGATGTGTATAAGGCATGGGTGAATCAACTTGAAACGGCCACAGGAGAGGCAAGTAAACTGCCTTATGAAGTCACAACAGAACAGGCCTTATCTCACGAGGAAGTGAGGGCTAAACTGGAAGTATCAAACCGGAGTCTGCGCACTGCCACGGACAAAGTGCTCAACTCCATCGTGTCCTCCTTGGATAATATTCCTTATGGCATGAGATACATAGCCAAAGTTCTGAAGAATTCACTGCATGAGAAATTCCCAGATGCAACAGAAGATGAGCTTTTAAAGATTGTGGGGAACCTGCTGTACTACCGCTATATGAACCCTGCCATCGTTGCCCCCGATGGCTTCGACATCATTGACATCACTGCTGGGGGACAGCTGCACACAGACCAGCGCAGGAACCTGGGCTCGGTGGCCAAGGTGCTACAGCACTCAGCCGCCAACAAGCTGTTTGAGGGGGACAATGCGCACATGACCTCCATGAACAACTACATATCACAGACCTATCAGAAATTCAGGAAATTTTTCCAGGCAGCGTGTGATGTCCCCTCACCTGAGGAAAAGTTCAATGTTGATGAATACTCCGACATTGTGACTCTCAGCAAACctgtcatttacatttcaatagaGGAAGTCATCAACACTCATTCGCTGGTACTAGAGCACCAGGATGCCATATCCCCAGATCATAATGACCTCCTGCATGAGCTACTGGAGGATCTGGGAGATGTTCCTGATGTGGAGTCTTTACTGGGGGAAGGAGCGGTGGACCCGAATGACCCCAACAAAGAGAATACACTAAGTCAGCTTGCCAAAACGGAAATCTCCCTCACCCTCACCAGCAAGTTTGAGCTGCGAGAGGGAGACGACAAAGACATGAAAAGCCTCATGATAAAAACAAAGAAGCTGATTGTGGATGTGGTGCGAGTCCATCCAGGAGAGACACTGATGGAGATCTTGGAGAACCCGGCTTCTGCCACACAGGAATCTGAACATGCAAAGATAGTTGAGAAGCGTGCCGTTCAGGACGCCAAAACCCCCgataaaatgaaaagcagccaGTCCATGCTTGAGGACGGGCAGCTCCCCTTGGagcagaagaaaaggaagatcCTGAGGAACCTGAGGACACTAGAGCAGGCAGGCCTGGTCTCTTCAGAGAACAAGTACCAGGAGATCATCAATGACATCTCCAAGGATATAAGAAACCAGAGACGGTATCGTCAGCGCAGGAAGGCAGAGCTGGTGAAGCTGCAGCAGACACTGAATGCACTCAACTCCAAGACAACCTTTTACCAGGACCAGATCAATTATTATGACACCTATATCAAAACCTGCTTGGACAACCTCAACAGAAAGAACTCCAGGAGGTCCATAAAGCTGGATGGgaaaggggaggagagaggcagCAAGAAGTTCAAGCAGCAGTCGCTGAAGTACACTGCGGCTCGGCTCCACGAGAAAGGAGTCATCCTGGAGATCGAGGGCCTGCAGGCCAACCAGTTTAAGAATGTCATGTTTGACATTTCACCCAGTGAAGAAGTTGGTGACTTTGACGTGAAAGCCAAGTTTATGGGAGTCGAAATGGAAAAAGTTCAGCTTCACTTCCAGGATCTTCTGCAGCTGCAGTATGAGGGAGTAGCGGTGATGAAGATGTTTGACAAAGCTAAAGTCAACGTTAACCTCCTGATATTCCTGCTGAACAAGAAGTTCTATGGAAAGTGAGGCACTTGGGGACACCTGGATCTCTTTGCATCAGTGCTTCCCACGTCCTGCTCTCACTGTACCttgcatttgaaatactttATTGTACCGTTTAATTTTGTAAAGGACTGAACTTTAAGGAAATAACAGATGTGTGCTTTATATTGGTGATGTagaaagaatgtatttttcatcattGAATGGCAGTATTGATTTAATACTGAATAATTGTCAGTGTATGTTATGCCACTGTGTTCGGGAGGTAATccgaaccaaaacaaaagtgacTAAAGAAAAGCCTTTGAATCTGGATTAATCTTTTAATCTGAATTaactggaaataattatttaatatcaaCCAAAAATCTCTGGCGGTGTTTGATTAAGGGCTTGGGGGTGTTTGTTTTCGGATTCAGCTGGGTGATTGTATATggagtatattttaaaattaaaattaatttttatACATAAAGTTATATGATCACACTTGCTTTcacttaatgtaaaaaaaaaaccatgaaTGAATATTTTTGTGTAATATGCACTACTGCCTTGTGGTCATAGGATCTCAATCTGTAGGCACCAAGTAGTAAAATGCAATATTCCCACCAACCctcactgtgttttctgtttatttaatgtgacCCTTTAATCCTTCACCATAGTACAAGGCTGTGCATCTTTTCAAAGCGACATTCCTTTAATTCCTTTGTGCTTCTTTAATAAATAGAAAGTGCCTTAATtgccaaaaaaaagttttgttaaaatcaaaataaatgagaaccttgaaatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009930 True 5625 mRNA 0.48 36 6112296 6149391

Neighbor

gene id symbol gene type direction distance location
AMCG00009926 NA coding upstream 113704 5986267 ~ 5998592 (+)
AMCG00009922 NA coding upstream 172206 5933021 ~ 5940090 (+)
AMCG00009923 ube2r2 coding upstream 217319 5890280 ~ 5894977 (+)
AMCG00009919 NA coding upstream 317370 5786425 ~ 5794926 (+)
AMCG00009916 LOC103362416,LOC106953753 coding upstream 368154 5717698 ~ 5744142 (+)
AMCG00009928 NA coding downstream 627 6150018 ~ 6154858 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding downstream 31012 6180403 ~ 6185389 (+)
AMCG00009934 NA coding downstream 76145 6225536 ~ 6241567 (+)
AMCG00009935 pde8b,LOC106568179,LOC106563036,LOC106928739 coding downstream 100509 6249900 ~ 6284991 (+)
AMCG00009940 scamp1,LOC107599399 coding downstream 380673 6530064 ~ 6538910 (+)
G76486 NA non-coding upstream 161476 5947878 ~ 5950820 (+)
G76484 NA non-coding upstream 166243 5945706 ~ 5946053 (+)
G76460 NA non-coding upstream 211314 5897310 ~ 5900982 (+)
G76434 NA non-coding upstream 336122 5775956 ~ 5776174 (+)
G76418 NA non-coding upstream 340347 5771674 ~ 5771949 (+)
G76550 NA non-coding downstream 12065 6161456 ~ 6166615 (+)
G76555 NA non-coding downstream 18220 6167611 ~ 6168308 (+)
G76658 NA non-coding downstream 592541 6741932 ~ 6742239 (+)
G76659 NA non-coding downstream 605130 6754521 ~ 6754936 (+)
G76663 NA non-coding downstream 641375 6790766 ~ 6792207 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 26490 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 343244 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 864115 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1191412 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3343788 2752260 ~ 2768508 (+)
AMCG00009959 NA other downstream 893206 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4153535 10302926 ~ 10313486 (+)
G77423 NA other downstream 5000235 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5140512 11289903 ~ 11389245 (+)
G77541 NA other downstream 5551315 11700706 ~ 11701081 (+)

Expression


Co-expression Network