AMCG00009934


Basic Information

Item Value
gene id AMCG00009934
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6225536 ~ 6241567 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009934
TGTAAACATCACAGCTTTCCAAACAGTAactttctttattataaaacaaaaatgtcttctAGGAAACTAAAGATGGGAGTTCGTTatatcatgtttattttcacgTTTCAGGTTAATCGGATGAGCGGAATTTAAGAGGACACTGGATTATTGATGTGAATCAATTTGCCAAACAGCGGGGAAGCATGTAGCTCACGAAAGCAGATTTGAGAAGGGAGCTGTATCATGACAACAAACGGGGAAGAAGGCTCAGAGAGGGAGCTGAGAGAGCTCAGCTTGAAGGTCGAGACTCTGGAGCAAGAACTGAAAAGCTGCAAAAGTGAGCTGTACAAGTTGCAGAAGCAACTTAATAAAACTGAGCGCTTGTATAAGAACACGGAGAGCTACAATGATGACCTGCGAAAGCAGGTTGATAAACTTAGCAAAGAAATTCACGacaggaagaagagagagaaaaacagaacagaggCAGAAACACAGACTGGAACTTCCTCTTCCTGGAATGAATCTGattattactactactacggACCATATTACCAGAGTGGAAATGAGGGTACCGAATCAAATCCGGTGACCAAGAAAGATTCAGAATCTGATGTACAACAGAACCATGGGACAGTGGCCACTGATGATGATGTCATGGGAAATGCCAGTGAACAAGAAAGGAAGGGCACCGCTGCAGTTCCAGAGGAATCTGACGGGACCTCAATAGCAGACATCTTGAGAGCCACGGCAGAGGAGGCAGTATCTCAGACTGGATTTGTCTTTGACGAATACTCAGGGATGTATTATGACCACAGCACAGGGTTCTACTATGACTCGaCAAGTCAGCTGTACTATGATGCCAACACCGGGATATACTATTACTATGATGCAGACAGTGGGCGCTACCAGTTTCATTCCCGCGTGGATGTACAAGCCGTTCAGCCAGATTCAGACCCAAGCCAGGAAAAAAAGGcgaaaaagagaaggaaagggaATGAAAGAGCCGCAGCTCCCGATGACCAGGACCTGAGAACTGAAGATCCAAAGTGTCACACAGTTCCTCAAGAGGAGGTGGTCGATGGAAAGATGCTAGAACAAAAACGCAAGAGGACAGGGCTGCTCCATAGAGCAGGGGCAGAAGGGCATAGGTCTGAGAGCCATAGCCCTAACTGTGTAGAAGACGAGGATGTGGCAATGACTGGGGATATGAGACGGGGCCTGCAGAGGTGTCACAGTCATGACactgagagtgagagtgagccCGAAGAGGGAGAGCTCACCGAGTCCGAGAGAGAGGAGGGCTCTTCTGAGGAGTGGACGGCCAGTGAAAGCTCTGACCCGTCAGACCACCAAGAAGAGCAAGCATGGCCACCGTGCGTTAGAGTGACTGTTGTCCGCTCACCAGTGCTGCAGACTGGAACTCTCTTCATCATAACAGCAGATACTCCAGCCACCATCGGGAGAGAAAAAGACATGGAACATGCGATAAGAATTCCTGAAATTGGTGTCAGTAAGtTCCATGCAGAAGTATACTTCGACCATGATTTACAAAGCTACGTACTGGTGGACCAGGGAAGCCAAAATGGGACTGTCATCAATGGAAACCGAATTCTGCAGCCTAAAGCTAAGTGTGATCCCTACACTTTGGCACATGGGGATGAAATAAAGATGGGGGAGACGGTCTTATCTTTCCACATCCACTCTGGGAATGACACGTGTGACGGCTGTGAGCCGGGGCAAGTCCTAGCACACCTAAGCCGCAACAAGAAGGCAGAGCTGAGTGGATCAGTGCTGAGCAAAGAGGATAAGGAGGCGCTACGCCAGAAAGAGCTGAAGCAAATGAAAGTCAAGTATGGTTTGAAAAGCAGCGATTATGAGGCGGCCACAGCCCTGAAGAACTCGAAGTACAAGGACCGCGCCGAGAAGCGTCGGCAGAAAGTGGGCAGCGAGGGGACCTTTCAGAGAGACGATGCTCCGGCTTCTGTTAACGTTGAAATCAGTGATGGCAACAAGGGACGGAAGATGCTTGAGAAGATGGGCTGGAAGAAAGGAGAGGGACTGGGCAAAGATAAAGCAGGCAGGAAAGATCCAATCCAGCTAGAGATGCGAAAGGCACAAGCAGGACTCGGTGTCAGCGCCCCGTTATCTGTGGAAGATGGGACActactaaaaactaaaaaccagAAGAACTGGGATAAAGCCAGAGAGAGGTTTGCAGACACCTGCCAAACTAAAAAgtccacaaaaaagaaagacaatcCCAAAGCTAAATCCTGGGTAAAAAGTGAAGATCGACACAGCGAGGTCCTGCGCATCGTGCAGCTGCAGGCCCGGCCGCTGTTTCTGAATGGGCTTCACTTTAGGAGGCTA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0060841 venous blood vessel development biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009934 True 2358 mRNA 0.48 16 6225536 6241567

Neighbor

gene id symbol gene type direction distance location
AMCG00009936 s100z,LOC107663035,LOC107720888 coding upstream 40147 6180403 ~ 6185389 (+)
AMCG00009928 NA coding upstream 70678 6150018 ~ 6154858 (+)
AMCG00009930 NA coding upstream 76145 6112296 ~ 6149391 (+)
AMCG00009926 NA coding upstream 226944 5986267 ~ 5998592 (+)
AMCG00009922 NA coding upstream 285446 5933021 ~ 5940090 (+)
AMCG00009935 pde8b,LOC106568179,LOC106563036,LOC106928739 coding downstream 8333 6249900 ~ 6284991 (+)
AMCG00009940 scamp1,LOC107599399 coding downstream 288497 6530064 ~ 6538910 (+)
AMCG00009945 bhmt,LOC105015174 coding downstream 424123 6665690 ~ 6670486 (+)
AMCG00009949 NA coding downstream 443200 6684767 ~ 6685849 (+)
AMCG00009948 NA coding downstream 458853 6700420 ~ 6724635 (+)
G76555 NA non-coding upstream 57228 6167611 ~ 6168308 (+)
G76550 NA non-coding upstream 58921 6161456 ~ 6166615 (+)
G76486 NA non-coding upstream 274716 5947878 ~ 5950820 (+)
G76484 NA non-coding upstream 279483 5945706 ~ 5946053 (+)
G76460 NA non-coding upstream 324554 5897310 ~ 5900982 (+)
G76658 NA non-coding downstream 500365 6741932 ~ 6742239 (+)
G76659 NA non-coding downstream 512954 6754521 ~ 6754936 (+)
G76663 NA non-coding downstream 549199 6790766 ~ 6792207 (+)
G76770 NA non-coding downstream 933912 7175479 ~ 7231357 (+)
G76799 NA non-coding downstream 1029268 7270835 ~ 7271745 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 139730 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 456484 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 977355 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1304652 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3457028 2752260 ~ 2768508 (+)
AMCG00009959 NA other downstream 801030 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4061359 10302926 ~ 10313486 (+)
G77423 NA other downstream 4908059 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5048336 11289903 ~ 11389245 (+)
G77541 NA other downstream 5459139 11700706 ~ 11701081 (+)

Expression


Co-expression Network