AMCG00009935 (pde8b,LOC106568179,LOC106563036,LOC106928739)


Basic Information

Item Value
gene id AMCG00009935
gene name pde8b,LOC106568179,LOC106563036,LOC106928739
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6249900 ~ 6284991 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009935
ATGGGCTGCGCTCCCAGTATCCACGTCTCTCAGAGCGGGGTGATCTACTGCAGGGACTCGGACGAGTCCAACTCCCCCCACCAGACCACCACCATCTCCCAGGGCACCGCGGCCACCCTGCACGGCCTCTTCATCAAGACCGACGCGGCGGACAGCATCCCCCCGGTGCTGGCGTACCAGAGCCGGCACAATCGGAGCAGCTCTCGCCGGGAGCGGAGGGAGACCAGCGGGGCGTATAGCGGCGTCGAGGCCGAGACGCAAACCAGTCACACCAGTGTCAAGGTTCTGCTAGTGTTTGCCAAAGAGGACAGCCAGAGTGACGGCTTTTGGGCAATCCGGGCTACAAAACCTGCGGAACATGCTGTCATTTTAGTCGTGGTGCCACAAGTacCTCAAGATCAGGAAGAACCATCTGCCCTGCCTCTTCTGAATTCTGGCTTTAACAGGAGATTTGTGGAGAACAGTGCGGTGACAGCGTGCTACAATGAGCTCATCCAGATTGAACACGGAGAGGTCCGGTCCCAGTTCAAACTGAGGGCCTGTAATTCGGTGTTCACAGCACTGGAGCACTGCCAGGAAGCAGTGGAAATAACTAGCGAGGAGAACGTCATACAGTATGTGAATCCTGCCTTTGAACGGATGATGGGATATCATAAGGGAGAGCTCATTGGTAAAGAACTGACTGAGTTACAGAAGAGCGACAAAAATCGGGCTGACCTTCTGGACACAATCAACACATGTATCAAGAAAGGAAAGGAATGGCAGGGCATTTACTACGCCAAGAGGAAGCCCGGGGACAGCATACAGCAGCATGTGAAGATCACGCCAGTCATTGGTCAGGGAGGGAAAATTAGACATTTTGTTGCTATCAAGAGACTTTGCAGCGACAAGAACAACCAGGTACACAAGACAAACCGGGAGGACAAGTACAGTGGAGAAAATTCACAGTCAGAATCCCAGTCTCTCAGGCACAAGGACAGGAGGAAAGAGTCAGTTGACGTCAGGTCGATAACCTCTCGAGGCAGCGATGCTCCCAGTTTACAAAACCGCAGATATTCCTCTGTGGCCCGGATTCACTCTATGACCATTGAGGCACCCATTACAAAGGTCATCAATATCATCAATGCAGCCCAGGAGAACAGCCCGGTCACAGTGGCAGAGGCTTTGGACAGAGTCTTAGAGATCCTGCGCACCACCGAGCTCTACTCTCCACAGCTGGGCTCCAAAGAGGACGACCCGCACACTAACGATCTGGTTGGGGGGCTCATGAGTGATGGCTTGCGAAAACTCTCTGGGAATGAATACGTCTTCTCCAAAAACATGACCCACAGTCACAGCCACCTGGCCGTGCCGGTGACCCTGAGCGACATCCCGCCTCACATCGCCGAGCTGCTGGACGATGAGGAGCAGTGGGACTTCAACATCTTTGAGTTAGAGGCAGCCACTCACAAGAGACCCCTTACCTTCCTCGGCCTGAAAATCTTTGCCCGTTTTGGCGTGTGTGAGTTCCTGAACTGCACGGAGGCCACACTGAGATCCTGGCTACAGGTCATTGAGGCCAACTACCACACCTCCAACTCCTATCACAACTCCACCCACGCAGCGGATGTCCTGCACGCCACGGCTTACTTCCTTCGCAAGGAGAGGGTGAAGGGCAGTCTGGATCAGCTGGATGAGGTGGCAGCTCTGATTGCGGCGACGGTGCACGACGTTGACCACCCCGGGCGCACCAACTCCTTCCTGTGCAATGCGGGCAGTGAGCTCGCCATCCTGTACAATGACACCGCCGTGCTGGAGAGCCACCACGCCGCCCTGGCCTTCCAGCTCACAGCAAGGGACAACAAGGGCAACATCTTCAAGAACATCGAGAGGACACAGTTCCGGACACTGCGGCAAGCGATTATTGACATGGTCCTGGCCACAGAAATGACCAGGCACTTTGAGCATGTGAACAAGTTTGTCAACAGTATCAATAAGCCCATGGCAGCTATTGAAGAATCCAGTTCTAATAGTGAAGGCAGCGACTGCGAGTGTCCAGCCAGCATAAAGAACTCTCCAGAGAACCGGCTGCTCATTAAACGCATGATGATCAAGTGTGCCGATGTAGCCAATCCCTGCAGAGCGCTGGAGTTGTGCATCGAGTGGGCAGGGAGGATCTCCGAGGAGTACTTCGCACAGACTGATGAAGAGAAGAGACAGGGGCTGCCTGTAGTTATGCCCGTATTTGATCGAAATACCTGCAGTATTCCAAAATCTCAGATCTCCTTTATTGATTATTTCATCACAGACATGTTTGATGCATGGGATGCCTTCGCTGACCTGCCTGACTTGATGCAGCACTTAGCAGAGAATTACAAATACTGGAAAACTCTGGATGAGATGAAGTGTAAGAGCCTGAGGCCCCCTCCTGATCTCTGA

Function

symbol description
pde8b Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in primary pigmented nodular adrenocortical disease. Orthologous to human PDE8B (phosphodiesterase 8B).

NR:

description
PREDICTED: high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B-like isoform X1

GO: NA

KEGG:

id description
K18437 PDE8; high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009935 True 2418 mRNA 0.54 21 6249900 6284991

Neighbor

gene id symbol gene type direction distance location
AMCG00009934 NA coding upstream 8333 6225536 ~ 6241567 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding upstream 64511 6180403 ~ 6185389 (+)
AMCG00009928 NA coding upstream 95042 6150018 ~ 6154858 (+)
AMCG00009930 NA coding upstream 100509 6112296 ~ 6149391 (+)
AMCG00009926 NA coding upstream 251308 5986267 ~ 5998592 (+)
AMCG00009940 scamp1,LOC107599399 coding downstream 245073 6530064 ~ 6538910 (+)
AMCG00009945 bhmt,LOC105015174 coding downstream 380699 6665690 ~ 6670486 (+)
AMCG00009949 NA coding downstream 399776 6684767 ~ 6685849 (+)
AMCG00009948 NA coding downstream 415429 6700420 ~ 6724635 (+)
AMCG00009953 NA coding downstream 511938 6796929 ~ 6810324 (+)
G76555 NA non-coding upstream 81592 6167611 ~ 6168308 (+)
G76550 NA non-coding upstream 83285 6161456 ~ 6166615 (+)
G76486 NA non-coding upstream 299080 5947878 ~ 5950820 (+)
G76484 NA non-coding upstream 303847 5945706 ~ 5946053 (+)
G76460 NA non-coding upstream 348918 5897310 ~ 5900982 (+)
G76658 NA non-coding downstream 456941 6741932 ~ 6742239 (+)
G76659 NA non-coding downstream 469530 6754521 ~ 6754936 (+)
G76663 NA non-coding downstream 505775 6790766 ~ 6792207 (+)
G76770 NA non-coding downstream 890488 7175479 ~ 7231357 (+)
G76799 NA non-coding downstream 985844 7270835 ~ 7271745 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 164094 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 480848 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 1001719 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1329016 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3481392 2752260 ~ 2768508 (+)
AMCG00009959 NA other downstream 757606 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4017935 10302926 ~ 10313486 (+)
G77423 NA other downstream 4864635 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5004912 11289903 ~ 11389245 (+)
G77541 NA other downstream 5415715 11700706 ~ 11701081 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000008_01457543_01508756 PDE8B coding CI01000008 null 1457144 ~ 1509278 (+)